Aconity_ML_Expt1/process_X_data.ipynb

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    "<h1>Preprocessing of the Aconity data</h1>\n",
    "<p>First, the aconity data needs to be processed so that it is easily ingestible by the machine learning model.</p>\n",
    "<p>This involves</p>\n",
    "<lo>\n",
    "<li>Reading and parsing the Aconity data files</li>\n",
    "<li>Calibrating the data to real units</li>\n",
    "<li>Masking and labelling the data</li>\n",
    "<li>Recontructing a time column from the indeces</li>\n",
    "<li>Saving the processed data for later use in the experiment</li>\n",
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      "application/javascript": "(function(root) {\n  function now() {\n    return new Date();\n  }\n\n  var force = true;\n  var py_version = '3.2.1'.replace('rc', '-rc.').replace('.dev', '-dev.');\n  var is_dev = py_version.indexOf(\"+\") !== -1 || py_version.indexOf(\"-\") !== -1;\n  var reloading = true;\n  var Bokeh = root.Bokeh;\n  var bokeh_loaded = Bokeh != null && (Bokeh.version === py_version || (Bokeh.versions !== undefined && Bokeh.versions.has(py_version)));\n\n  if (typeof (root._bokeh_timeout) === \"undefined\" || force) {\n    root._bokeh_timeout = Date.now() + 5000;\n    root._bokeh_failed_load = false;\n  }\n\n  function run_callbacks() {\n    try {\n      root._bokeh_onload_callbacks.forEach(function(callback) {\n        if (callback != null)\n          callback();\n      });\n    } finally {\n      delete root._bokeh_onload_callbacks;\n    }\n    console.debug(\"Bokeh: all callbacks have finished\");\n  }\n\n  function load_libs(css_urls, js_urls, js_modules, js_exports, callback) {\n    if (css_urls == null) css_urls = [];\n    if (js_urls == null) js_urls = [];\n    if (js_modules == null) js_modules = [];\n    if (js_exports == null) js_exports = {};\n\n    root._bokeh_onload_callbacks.push(callback);\n\n    if (root._bokeh_is_loading > 0) {\n      console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n      return null;\n    }\n    if (js_urls.length === 0 && js_modules.length === 0 && Object.keys(js_exports).length === 0) {\n      run_callbacks();\n      return null;\n    }\n    if (!reloading) {\n      console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n    }\n\n    function on_load() {\n      root._bokeh_is_loading--;\n      if (root._bokeh_is_loading === 0) {\n        console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n        run_callbacks()\n      }\n    }\n    window._bokeh_on_load = on_load\n\n    function on_error() {\n      console.error(\"failed to load \" + url);\n    }\n\n    var skip = [];\n    if (window.requirejs) {\n      window.requirejs.config({'packages': {}, 'paths': {'plotly': 'https://cdn.plot.ly/plotly-2.18.0.min', 'jspanel': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/jspanel', 'jspanel-modal': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/modal/jspanel.modal', 'jspanel-tooltip': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/tooltip/jspanel.tooltip', 'jspanel-hint': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/hint/jspanel.hint', 'jspanel-layout': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/layout/jspanel.layout', 'jspanel-contextmenu': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/contextmenu/jspanel.contextmenu', 'jspanel-dock': 'https://cdn.jsdelivr.net/npm/jspanel4@4.12.0/dist/extensions/dock/jspanel.dock', 'gridstack': 'https://cdn.jsdelivr.net/npm/gridstack@7.2.3/dist/gridstack-all', 'notyf': 'https://cdn.jsdelivr.net/npm/notyf@3/notyf.min'}, 'shim': {'jspanel': {'exports': 'jsPanel'}, 'gridstack': {'exports': 'GridStack'}}});\n      require([\"plotly\"], function(Plotly) {\n\twindow.Plotly = Plotly\n\ton_load()\n      })\n      require([\"jspanel\"], function(jsPanel) {\n\twindow.jsPanel = jsPanel\n\ton_load()\n      })\n      require([\"jspanel-modal\"], function() {\n\ton_load()\n      })\n      require([\"jspanel-tooltip\"], function() {\n\ton_load()\n      })\n      require([\"jspanel-hint\"], function() {\n\ton_load()\n      })\n      require([\"jspanel-layout\"], function() {\n\ton_load()\n      })\n      require([\"jspanel-contextmenu\"], function() {\n\ton_load()\n      })\n      require([\"jspanel-dock\"], function() {\n\ton_load()\n      })\n      require([\"gridstack\"], function(GridStack) {\n\twindow.GridStack = GridStack\n\ton_load()\n      })\n      require([\"notyf\"], function() {\n\ton_load()\n      })\n      root._bokeh_is_loading = css_urls.length + 10;\n    } else {\n      root._bokeh_is_loading = css_urls.length + js_urls.length + js_modules.length + Object.keys(js_exports).length;\n    }\n\n    var existing_stylesheets = []\n    var links = document.getElementsByTagName('link')\n    for (var i = 0; i < links.length; i++) {\n      var link = links[i]\n      if (link.href != null) {\n\texisting_stylesheets.push(link.href)\n      }\n    }\n    for (var i = 0; i < css_urls.length; i++) {\n      var url = css_urls[i];\n      if (existing_stylesheets.indexOf(url) !== -1) {\n\ton_load()\n\tcontinue;\n      }\n      const element = document.createElement(\"link\");\n      element.onload = on_load;\n      element.onerror = on_error;\n      element.rel = \"stylesheet\";\n      element.type = \"text/css\";\n      element.href = url;\n      console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n      document.body.appendChild(element);\n    }    if (((window['Plotly'] !== undefined) && (!(window['Plotly'] instanceof HTMLElement))) || window.requirejs) {\n      var urls = ['https://cdn.holoviz.org/panel/1.2.1/dist/bundled/plotlyplot/plotly-2.18.0.min.js'];\n      for (var i = 0; i < urls.length; i++) {\n        skip.push(urls[i])\n      }\n    }    if (((window['jsPanel'] !== undefined) && (!(window['jsPanel'] instanceof HTMLElement))) || window.requirejs) {\n      var urls = ['https://cdn.holoviz.org/panel/1.2.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/jspanel.js', 'https://cdn.holoviz.org/panel/1.2.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/modal/jspanel.modal.js', 'https://cdn.holoviz.org/panel/1.2.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/tooltip/jspanel.tooltip.js', 'https://cdn.holoviz.org/panel/1.2.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/hint/jspanel.hint.js', 'https://cdn.holoviz.org/panel/1.2.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/layout/jspanel.layout.js', 'https://cdn.holoviz.org/panel/1.2.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/contextmenu/jspanel.contextmenu.js', 'https://cdn.holoviz.org/panel/1.2.1/dist/bundled/floatpanel/jspanel4@4.12.0/dist/extensions/dock/jspanel.dock.js'];\n      for (var i = 0; i < urls.length; i++) {\n        skip.push(urls[i])\n      }\n    }    if (((window['GridStack'] !== undefined) && (!(window['GridStack'] instanceof HTMLElement))) || window.requirejs) {\n      var urls = ['https://cdn.holoviz.org/panel/1.2.1/dist/bundled/gridstack/gridstack@7.2.3/dist/gridstack-all.js'];\n      for (var i = 0; i < urls.length; i++) {\n        skip.push(urls[i])\n      }\n    }    if (((window['Notyf'] !== undefined) && (!(window['Notyf'] instanceof HTMLElement))) || window.requirejs) {\n      var urls = ['https://cdn.holoviz.org/panel/1.2.1/dist/bundled/notificationarea/notyf@3/notyf.min.js'];\n      for (var i = 0; i < urls.length; i++) {\n        skip.push(urls[i])\n      }\n    }    var existing_scripts = []\n    var scripts = document.getElementsByTagName('script')\n    for (var i = 0; i < scripts.length; i++) {\n      var script = scripts[i]\n      if (script.src != null) {\n\texisting_scripts.push(script.src)\n      }\n    }\n    for (var i = 0; i < js_urls.length; i++) {\n      var url = js_urls[i];\n      if (skip.indexOf(url) !== -1 || existing_scripts.indexOf(url) !== -1) {\n\tif (!window.requirejs) {\n\t  on_load();\n\t}\n\tcontinue;\n      }\n      var element = document.createElement('script');\n      element.onload = on_load;\n      element.onerror = on_error;\n      element.async = false;\n      element.src = url;\n      console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n      document.head.appendChild(element);\n    }\n    for (var i = 0; i < js_modules.length; i++) {\n      var url = js_modules[i];\n      if (skip.indexOf(url) !== -1 || existing_scripts.indexOf(url) !== -1) {\n\tif (!window.requirejs) {\n\t  on_load();\n\t}\n\tcontinue;\n      }\n      var element = document.createElement('script');\n      element.onload = on_load;\n      element.onerror = on_error;\n      element.async = false;\n      element.src = url;\n      element.type = \"module\";\n      console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n      document.head.appendChild(element);\n    }\n    for (const name in js_exports) {\n      var url = js_exports[name];\n      if (skip.indexOf(url) >= 0 || root[name] != null) {\n\tif (!window.requirejs) {\n\t  on_load();\n\t}\n\tcontinue;\n      }\n      var element = document.createElement('script');\n      element.onerror = on_error;\n      element.async = false;\n      element.type = \"module\";\n      console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n      element.textContent = `\n      import ${name} from \"${url}\"\n      window.${name} = ${name}\n      window._bokeh_on_load()\n      `\n      document.head.appendChild(element);\n    }\n    if (!js_urls.length && !js_modules.length) {\n      on_load()\n    }\n  };\n\n  function inject_raw_css(css) {\n    const element = document.createElement(\"style\");\n    element.appendChild(document.createTextNode(css));\n    document.body.appendChild(element);\n  }\n\n  var js_urls = [\"https://cdn.holoviz.org/panel/1.2.1/dist/bundled/jquery/jquery.slim.min.js\", \"https://cdn.holoviz.org/panel/1.2.1/dist/bundled/plotlyplot/plotly-2.18.0.min.js\"];\n  var js_modules = [];\n  var js_exports = {};\n  var css_urls = [];\n  var inline_js = [    function(Bokeh) {\n      Bokeh.set_log_level(\"info\");\n    },\nfunction(Bokeh) {} // ensure no trailing comma for IE\n  ];\n\n  function run_inline_js() {\n    if ((root.Bokeh !== undefined) || (force === true)) {\n      for (var i = 0; i < inline_js.length; i++) {\n        inline_js[i].call(root, root.Bokeh);\n      }\n      // Cache old bokeh versions\n      if (Bokeh != undefined && !reloading) {\n\tvar NewBokeh = root.Bokeh;\n\tif (Bokeh.versions === undefined) {\n\t  Bokeh.versions = new Map();\n\t}\n\tif (NewBokeh.version !== Bokeh.version) {\n\t  Bokeh.versions.set(NewBokeh.version, NewBokeh)\n\t}\n\troot.Bokeh = Bokeh;\n      }} else if (Date.now() < root._bokeh_timeout) {\n      setTimeout(run_inline_js, 100);\n    } else if (!root._bokeh_failed_load) {\n      console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n      root._bokeh_failed_load = true;\n    }\n    root._bokeh_is_initializing = false\n  }\n\n  function load_or_wait() {\n    // Implement a backoff loop that tries to ensure we do not load multiple\n    // versions of Bokeh and its dependencies at the same time.\n    // In recent versions we use the root._bokeh_is_initializing flag\n    // to determine whether there is an ongoing attempt to initialize\n    // bokeh, however for backward compatibility we also try to ensure\n    // that we do not start loading a newer (Panel>=1.0 and Bokeh>3) version\n    // before older versions are fully initialized.\n    if (root._bokeh_is_initializing && Date.now() > root._bokeh_timeout) {\n      root._bokeh_is_initializing = false;\n      root._bokeh_onload_callbacks = undefined;\n      console.log(\"Bokeh: BokehJS was loaded multiple times but one version failed to initialize.\");\n      load_or_wait();\n    } else if (root._bokeh_is_initializing || (typeof root._bokeh_is_initializing === \"undefined\" && root._bokeh_onload_callbacks !== undefined)) {\n      setTimeout(load_or_wait, 100);\n    } else {\n      Bokeh = root.Bokeh;\n      bokeh_loaded = Bokeh != null && (Bokeh.version === py_version || (Bokeh.versions !== undefined && Bokeh.versions.has(py_version)));\n      root._bokeh_is_initializing = true\n      root._bokeh_onload_callbacks = []\n      if (!reloading && (!bokeh_loaded || is_dev)) {\n\troot.Bokeh = undefined;\n      }\n      load_libs(css_urls, js_urls, js_modules, js_exports, function() {\n\tconsole.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n\trun_inline_js();\n      });\n    }\n  }\n  // Give older versions of the autoload script a head-start to ensure\n  // they initialize before we start loading newer version.\n  setTimeout(load_or_wait, 100)\n}(window));",
      "application/vnd.holoviews_load.v0+json": ""
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "application/javascript": "\nif ((window.PyViz === undefined) || (window.PyViz instanceof HTMLElement)) {\n  window.PyViz = {comms: {}, comm_status:{}, kernels:{}, receivers: {}, plot_index: []}\n}\n\n\n    function JupyterCommManager() {\n    }\n\n    JupyterCommManager.prototype.register_target = function(plot_id, comm_id, msg_handler) {\n      if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n        var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n        comm_manager.register_target(comm_id, function(comm) {\n          comm.on_msg(msg_handler);\n        });\n      } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n        window.PyViz.kernels[plot_id].registerCommTarget(comm_id, function(comm) {\n          comm.onMsg = msg_handler;\n        });\n      } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n        google.colab.kernel.comms.registerTarget(comm_id, (comm) => {\n          var messages = comm.messages[Symbol.asyncIterator]();\n          function processIteratorResult(result) {\n            var message = result.value;\n            console.log(message)\n            var content = {data: message.data, comm_id};\n            var buffers = []\n            for (var buffer of message.buffers || []) {\n              buffers.push(new DataView(buffer))\n            }\n            var metadata = message.metadata || {};\n            var msg = {content, buffers, metadata}\n            msg_handler(msg);\n            return messages.next().then(processIteratorResult);\n          }\n          return messages.next().then(processIteratorResult);\n        })\n      }\n    }\n\n    JupyterCommManager.prototype.get_client_comm = function(plot_id, comm_id, msg_handler) {\n      if (comm_id in window.PyViz.comms) {\n        return window.PyViz.comms[comm_id];\n      } else if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n        var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n        var comm = comm_manager.new_comm(comm_id, {}, {}, {}, comm_id);\n        if (msg_handler) {\n          comm.on_msg(msg_handler);\n        }\n      } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n        var comm = window.PyViz.kernels[plot_id].connectToComm(comm_id);\n        comm.open();\n        if (msg_handler) {\n          comm.onMsg = msg_handler;\n        }\n      } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n        var comm_promise = google.colab.kernel.comms.open(comm_id)\n        comm_promise.then((comm) => {\n          window.PyViz.comms[comm_id] = comm;\n          if (msg_handler) {\n            var messages = comm.messages[Symbol.asyncIterator]();\n            function processIteratorResult(result) {\n              var message = result.value;\n              var content = {data: message.data};\n              var metadata = message.metadata || {comm_id};\n              var msg = {content, metadata}\n              msg_handler(msg);\n              return messages.next().then(processIteratorResult);\n            }\n            return messages.next().then(processIteratorResult);\n          }\n        }) \n        var sendClosure = (data, metadata, buffers, disposeOnDone) => {\n          return comm_promise.then((comm) => {\n            comm.send(data, metadata, buffers, disposeOnDone);\n          });\n        };\n        var comm = {\n          send: sendClosure\n        };\n      }\n      window.PyViz.comms[comm_id] = comm;\n      return comm;\n    }\n    window.PyViz.comm_manager = new JupyterCommManager();\n    \n\n\nvar JS_MIME_TYPE = 'application/javascript';\nvar HTML_MIME_TYPE = 'text/html';\nvar EXEC_MIME_TYPE = 'application/vnd.holoviews_exec.v0+json';\nvar CLASS_NAME = 'output';\n\n/**\n * Render data to the DOM node\n */\nfunction render(props, node) {\n  var div = document.createElement(\"div\");\n  var script = document.createElement(\"script\");\n  node.appendChild(div);\n  node.appendChild(script);\n}\n\n/**\n * Handle when a new output is added\n */\nfunction handle_add_output(event, handle) {\n  var output_area = handle.output_area;\n  var output = handle.output;\n  if ((output.data == undefined) || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n    return\n  }\n  var id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n  var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n  if (id !== undefined) {\n    var nchildren = toinsert.length;\n    var html_node = toinsert[nchildren-1].children[0];\n    html_node.innerHTML = output.data[HTML_MIME_TYPE];\n    var scripts = [];\n    var nodelist = html_node.querySelectorAll(\"script\");\n    for (var i in nodelist) {\n      if (nodelist.hasOwnProperty(i)) {\n        scripts.push(nodelist[i])\n      }\n    }\n\n    scripts.forEach( function (oldScript) {\n      var newScript = document.createElement(\"script\");\n      var attrs = [];\n      var nodemap = oldScript.attributes;\n      for (var j in nodemap) {\n        if (nodemap.hasOwnProperty(j)) {\n          attrs.push(nodemap[j])\n        }\n      }\n      attrs.forEach(function(attr) { newScript.setAttribute(attr.name, attr.value) });\n      newScript.appendChild(document.createTextNode(oldScript.innerHTML));\n      oldScript.parentNode.replaceChild(newScript, oldScript);\n    });\n    if (JS_MIME_TYPE in output.data) {\n      toinsert[nchildren-1].children[1].textContent = output.data[JS_MIME_TYPE];\n    }\n    output_area._hv_plot_id = id;\n    if ((window.Bokeh !== undefined) && (id in Bokeh.index)) {\n      window.PyViz.plot_index[id] = Bokeh.index[id];\n    } else {\n      window.PyViz.plot_index[id] = null;\n    }\n  } else if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n    var bk_div = document.createElement(\"div\");\n    bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n    var script_attrs = bk_div.children[0].attributes;\n    for (var i = 0; i < script_attrs.length; i++) {\n      toinsert[toinsert.length - 1].childNodes[1].setAttribute(script_attrs[i].name, script_attrs[i].value);\n    }\n    // store reference to server id on output_area\n    output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n  }\n}\n\n/**\n * Handle when an output is cleared or removed\n */\nfunction handle_clear_output(event, handle) {\n  var id = handle.cell.output_area._hv_plot_id;\n  var server_id = handle.cell.output_area._bokeh_server_id;\n  if (((id === undefined) || !(id in PyViz.plot_index)) && (server_id !== undefined)) { return; }\n  var comm = window.PyViz.comm_manager.get_client_comm(\"hv-extension-comm\", \"hv-extension-comm\", function () {});\n  if (server_id !== null) {\n    comm.send({event_type: 'server_delete', 'id': server_id});\n    return;\n  } else if (comm !== null) {\n    comm.send({event_type: 'delete', 'id': id});\n  }\n  delete PyViz.plot_index[id];\n  if ((window.Bokeh !== undefined) & (id in window.Bokeh.index)) {\n    var doc = window.Bokeh.index[id].model.document\n    doc.clear();\n    const i = window.Bokeh.documents.indexOf(doc);\n    if (i > -1) {\n      window.Bokeh.documents.splice(i, 1);\n    }\n  }\n}\n\n/**\n * Handle kernel restart event\n */\nfunction handle_kernel_cleanup(event, handle) {\n  delete PyViz.comms[\"hv-extension-comm\"];\n  window.PyViz.plot_index = {}\n}\n\n/**\n * Handle update_display_data messages\n */\nfunction handle_update_output(event, handle) {\n  handle_clear_output(event, {cell: {output_area: handle.output_area}})\n  handle_add_output(event, handle)\n}\n\nfunction register_renderer(events, OutputArea) {\n  function append_mime(data, metadata, element) {\n    // create a DOM node to render to\n    var toinsert = this.create_output_subarea(\n    metadata,\n    CLASS_NAME,\n    EXEC_MIME_TYPE\n    );\n    this.keyboard_manager.register_events(toinsert);\n    // Render to node\n    var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n    render(props, toinsert[0]);\n    element.append(toinsert);\n    return toinsert\n  }\n\n  events.on('output_added.OutputArea', handle_add_output);\n  events.on('output_updated.OutputArea', handle_update_output);\n  events.on('clear_output.CodeCell', handle_clear_output);\n  events.on('delete.Cell', handle_clear_output);\n  events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n\n  OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n    safe: true,\n    index: 0\n  });\n}\n\nif (window.Jupyter !== undefined) {\n  try {\n    var events = require('base/js/events');\n    var OutputArea = require('notebook/js/outputarea').OutputArea;\n    if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n      register_renderer(events, OutputArea);\n    }\n  } catch(err) {\n  }\n}\n",
      "application/vnd.holoviews_load.v0+json": ""
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "text/html": [
       "<style>*[data-root-id],\n",
       "*[data-root-id] > * {\n",
       "  box-sizing: border-box;\n",
       "  font-family: var(--jp-ui-font-family);\n",
       "  font-size: var(--jp-ui-font-size1);\n",
       "  color: var(--vscode-editor-foreground, var(--jp-ui-font-color1));\n",
       "}\n",
       "\n",
       "/* Override VSCode background color */\n",
       ".cell-output-ipywidget-background:has(\n",
       "    > .cell-output-ipywidget-background > .lm-Widget > *[data-root-id]\n",
       "  ),\n",
       ".cell-output-ipywidget-background:has(> .lm-Widget > *[data-root-id]) {\n",
       "  background-color: transparent !important;\n",
       "}\n",
       "</style>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "from MTPy.meltpool_tomography import MeltpoolTomography\n",
    "from dask.distributed import Client, LocalCluster\n",
    "import pickle\n",
    "from tqdm.auto import tqdm"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {
    "notebookRunGroups": {
     "groupValue": "1"
    }
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "    <div style=\"width: 24px; height: 24px; background-color: #e1e1e1; border: 3px solid #9D9D9D; border-radius: 5px; position: absolute;\"> </div>\n",
       "    <div style=\"margin-left: 48px;\">\n",
       "        <h3 style=\"margin-bottom: 0px;\">Client</h3>\n",
       "        <p style=\"color: #9D9D9D; margin-bottom: 0px;\">Client-cc46c5b3-2c7c-11ee-b267-94e70ba5618f</p>\n",
       "        <table style=\"width: 100%; text-align: left;\">\n",
       "\n",
       "        <tr>\n",
       "        \n",
       "            <td style=\"text-align: left;\"><strong>Connection method:</strong> Cluster object</td>\n",
       "            <td style=\"text-align: left;\"><strong>Cluster type:</strong> distributed.LocalCluster</td>\n",
       "        \n",
       "        </tr>\n",
       "\n",
       "        \n",
       "            <tr>\n",
       "                <td style=\"text-align: left;\">\n",
       "                    <strong>Dashboard: </strong> <a href=\"http://127.0.0.1:34089/status\" target=\"_blank\">http://127.0.0.1:34089/status</a>\n",
       "                </td>\n",
       "                <td style=\"text-align: left;\"></td>\n",
       "            </tr>\n",
       "        \n",
       "\n",
       "        </table>\n",
       "\n",
       "        \n",
       "\n",
       "        \n",
       "            <details>\n",
       "            <summary style=\"margin-bottom: 20px;\"><h3 style=\"display: inline;\">Cluster Info</h3></summary>\n",
       "            <div class=\"jp-RenderedHTMLCommon jp-RenderedHTML jp-mod-trusted jp-OutputArea-output\">\n",
       "    <div style=\"width: 24px; height: 24px; background-color: #e1e1e1; border: 3px solid #9D9D9D; border-radius: 5px; position: absolute;\">\n",
       "    </div>\n",
       "    <div style=\"margin-left: 48px;\">\n",
       "        <h3 style=\"margin-bottom: 0px; margin-top: 0px;\">LocalCluster</h3>\n",
       "        <p style=\"color: #9D9D9D; margin-bottom: 0px;\">ad76abc0</p>\n",
       "        <table style=\"width: 100%; text-align: left;\">\n",
       "            <tr>\n",
       "                <td style=\"text-align: left;\">\n",
       "                    <strong>Dashboard:</strong> <a href=\"http://127.0.0.1:34089/status\" target=\"_blank\">http://127.0.0.1:34089/status</a>\n",
       "                </td>\n",
       "                <td style=\"text-align: left;\">\n",
       "                    <strong>Workers:</strong> 12\n",
       "                </td>\n",
       "            </tr>\n",
       "            <tr>\n",
       "                <td style=\"text-align: left;\">\n",
       "                    <strong>Total threads:</strong> 12\n",
       "                </td>\n",
       "                <td style=\"text-align: left;\">\n",
       "                    <strong>Total memory:</strong> 15.27 GiB\n",
       "                </td>\n",
       "            </tr>\n",
       "            \n",
       "            <tr>\n",
       "    <td style=\"text-align: left;\"><strong>Status:</strong> running</td>\n",
       "    <td style=\"text-align: left;\"><strong>Using processes:</strong> True</td>\n",
       "</tr>\n",
       "\n",
       "            \n",
       "        </table>\n",
       "\n",
       "        <details>\n",
       "            <summary style=\"margin-bottom: 20px;\">\n",
       "                <h3 style=\"display: inline;\">Scheduler Info</h3>\n",
       "            </summary>\n",
       "\n",
       "            <div style=\"\">\n",
       "    <div>\n",
       "        <div style=\"width: 24px; height: 24px; background-color: #FFF7E5; border: 3px solid #FF6132; border-radius: 5px; position: absolute;\"> </div>\n",
       "        <div style=\"margin-left: 48px;\">\n",
       "            <h3 style=\"margin-bottom: 0px;\">Scheduler</h3>\n",
       "            <p style=\"color: #9D9D9D; margin-bottom: 0px;\">Scheduler-7d36e136-3f7a-477e-8be9-0dfc6e76f7e6</p>\n",
       "            <table style=\"width: 100%; text-align: left;\">\n",
       "                <tr>\n",
       "                    <td style=\"text-align: left;\">\n",
       "                        <strong>Comm:</strong> tcp://127.0.0.1:43953\n",
       "                    </td>\n",
       "                    <td style=\"text-align: left;\">\n",
       "                        <strong>Workers:</strong> 12\n",
       "                    </td>\n",
       "                </tr>\n",
       "                <tr>\n",
       "                    <td style=\"text-align: left;\">\n",
       "                        <strong>Dashboard:</strong> <a href=\"http://127.0.0.1:34089/status\" target=\"_blank\">http://127.0.0.1:34089/status</a>\n",
       "                    </td>\n",
       "                    <td style=\"text-align: left;\">\n",
       "                        <strong>Total threads:</strong> 12\n",
       "                    </td>\n",
       "                </tr>\n",
       "                <tr>\n",
       "                    <td style=\"text-align: left;\">\n",
       "                        <strong>Started:</strong> Just now\n",
       "                    </td>\n",
       "                    <td style=\"text-align: left;\">\n",
       "                        <strong>Total memory:</strong> 15.27 GiB\n",
       "                    </td>\n",
       "                </tr>\n",
       "            </table>\n",
       "        </div>\n",
       "    </div>\n",
       "\n",
       "    <details style=\"margin-left: 48px;\">\n",
       "        <summary style=\"margin-bottom: 20px;\">\n",
       "            <h3 style=\"display: inline;\">Workers</h3>\n",
       "        </summary>\n",
       "\n",
       "        \n",
       "        <div style=\"margin-bottom: 20px;\">\n",
       "            <div style=\"width: 24px; height: 24px; background-color: #DBF5FF; border: 3px solid #4CC9FF; border-radius: 5px; position: absolute;\"> </div>\n",
       "            <div style=\"margin-left: 48px;\">\n",
       "            <details>\n",
       "                <summary>\n",
       "                    <h4 style=\"margin-bottom: 0px; display: inline;\">Worker: 0</h4>\n",
       "                </summary>\n",
       "                <table style=\"width: 100%; text-align: left;\">\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Comm: </strong> tcp://127.0.0.1:42697\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Total threads: </strong> 1\n",
       "                        </td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Dashboard: </strong> <a href=\"http://127.0.0.1:39477/status\" target=\"_blank\">http://127.0.0.1:39477/status</a>\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Memory: </strong> 1.27 GiB\n",
       "                        </td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Nanny: </strong> tcp://127.0.0.1:46605\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\"></td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td colspan=\"2\" style=\"text-align: left;\">\n",
       "                            <strong>Local directory: </strong> /tmp/dask-scratch-space/worker-kv94k4sa\n",
       "                        </td>\n",
       "                    </tr>\n",
       "\n",
       "                    \n",
       "\n",
       "                    \n",
       "\n",
       "                </table>\n",
       "            </details>\n",
       "            </div>\n",
       "        </div>\n",
       "        \n",
       "        <div style=\"margin-bottom: 20px;\">\n",
       "            <div style=\"width: 24px; height: 24px; background-color: #DBF5FF; border: 3px solid #4CC9FF; border-radius: 5px; position: absolute;\"> </div>\n",
       "            <div style=\"margin-left: 48px;\">\n",
       "            <details>\n",
       "                <summary>\n",
       "                    <h4 style=\"margin-bottom: 0px; display: inline;\">Worker: 1</h4>\n",
       "                </summary>\n",
       "                <table style=\"width: 100%; text-align: left;\">\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Comm: </strong> tcp://127.0.0.1:36513\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Total threads: </strong> 1\n",
       "                        </td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Dashboard: </strong> <a href=\"http://127.0.0.1:43571/status\" target=\"_blank\">http://127.0.0.1:43571/status</a>\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Memory: </strong> 1.27 GiB\n",
       "                        </td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Nanny: </strong> tcp://127.0.0.1:35659\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\"></td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td colspan=\"2\" style=\"text-align: left;\">\n",
       "                            <strong>Local directory: </strong> /tmp/dask-scratch-space/worker-u1r_1ar7\n",
       "                        </td>\n",
       "                    </tr>\n",
       "\n",
       "                    \n",
       "\n",
       "                    \n",
       "\n",
       "                </table>\n",
       "            </details>\n",
       "            </div>\n",
       "        </div>\n",
       "        \n",
       "        <div style=\"margin-bottom: 20px;\">\n",
       "            <div style=\"width: 24px; height: 24px; background-color: #DBF5FF; border: 3px solid #4CC9FF; border-radius: 5px; position: absolute;\"> </div>\n",
       "            <div style=\"margin-left: 48px;\">\n",
       "            <details>\n",
       "                <summary>\n",
       "                    <h4 style=\"margin-bottom: 0px; display: inline;\">Worker: 2</h4>\n",
       "                </summary>\n",
       "                <table style=\"width: 100%; text-align: left;\">\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Comm: </strong> tcp://127.0.0.1:42551\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Total threads: </strong> 1\n",
       "                        </td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Dashboard: </strong> <a href=\"http://127.0.0.1:40447/status\" target=\"_blank\">http://127.0.0.1:40447/status</a>\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Memory: </strong> 1.27 GiB\n",
       "                        </td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Nanny: </strong> tcp://127.0.0.1:44567\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\"></td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td colspan=\"2\" style=\"text-align: left;\">\n",
       "                            <strong>Local directory: </strong> /tmp/dask-scratch-space/worker-f2_122y9\n",
       "                        </td>\n",
       "                    </tr>\n",
       "\n",
       "                    \n",
       "\n",
       "                    \n",
       "\n",
       "                </table>\n",
       "            </details>\n",
       "            </div>\n",
       "        </div>\n",
       "        \n",
       "        <div style=\"margin-bottom: 20px;\">\n",
       "            <div style=\"width: 24px; height: 24px; background-color: #DBF5FF; border: 3px solid #4CC9FF; border-radius: 5px; position: absolute;\"> </div>\n",
       "            <div style=\"margin-left: 48px;\">\n",
       "            <details>\n",
       "                <summary>\n",
       "                    <h4 style=\"margin-bottom: 0px; display: inline;\">Worker: 3</h4>\n",
       "                </summary>\n",
       "                <table style=\"width: 100%; text-align: left;\">\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Comm: </strong> tcp://127.0.0.1:44047\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Total threads: </strong> 1\n",
       "                        </td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Dashboard: </strong> <a href=\"http://127.0.0.1:38767/status\" target=\"_blank\">http://127.0.0.1:38767/status</a>\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Memory: </strong> 1.27 GiB\n",
       "                        </td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Nanny: </strong> tcp://127.0.0.1:33165\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\"></td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td colspan=\"2\" style=\"text-align: left;\">\n",
       "                            <strong>Local directory: </strong> /tmp/dask-scratch-space/worker-q06r043l\n",
       "                        </td>\n",
       "                    </tr>\n",
       "\n",
       "                    \n",
       "\n",
       "                    \n",
       "\n",
       "                </table>\n",
       "            </details>\n",
       "            </div>\n",
       "        </div>\n",
       "        \n",
       "        <div style=\"margin-bottom: 20px;\">\n",
       "            <div style=\"width: 24px; height: 24px; background-color: #DBF5FF; border: 3px solid #4CC9FF; border-radius: 5px; position: absolute;\"> </div>\n",
       "            <div style=\"margin-left: 48px;\">\n",
       "            <details>\n",
       "                <summary>\n",
       "                    <h4 style=\"margin-bottom: 0px; display: inline;\">Worker: 4</h4>\n",
       "                </summary>\n",
       "                <table style=\"width: 100%; text-align: left;\">\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Comm: </strong> tcp://127.0.0.1:46665\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Total threads: </strong> 1\n",
       "                        </td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Dashboard: </strong> <a href=\"http://127.0.0.1:39777/status\" target=\"_blank\">http://127.0.0.1:39777/status</a>\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Memory: </strong> 1.27 GiB\n",
       "                        </td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Nanny: </strong> tcp://127.0.0.1:36763\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\"></td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td colspan=\"2\" style=\"text-align: left;\">\n",
       "                            <strong>Local directory: </strong> /tmp/dask-scratch-space/worker-pgd4rnzb\n",
       "                        </td>\n",
       "                    </tr>\n",
       "\n",
       "                    \n",
       "\n",
       "                    \n",
       "\n",
       "                </table>\n",
       "            </details>\n",
       "            </div>\n",
       "        </div>\n",
       "        \n",
       "        <div style=\"margin-bottom: 20px;\">\n",
       "            <div style=\"width: 24px; height: 24px; background-color: #DBF5FF; border: 3px solid #4CC9FF; border-radius: 5px; position: absolute;\"> </div>\n",
       "            <div style=\"margin-left: 48px;\">\n",
       "            <details>\n",
       "                <summary>\n",
       "                    <h4 style=\"margin-bottom: 0px; display: inline;\">Worker: 5</h4>\n",
       "                </summary>\n",
       "                <table style=\"width: 100%; text-align: left;\">\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Comm: </strong> tcp://127.0.0.1:45981\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Total threads: </strong> 1\n",
       "                        </td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Dashboard: </strong> <a href=\"http://127.0.0.1:35991/status\" target=\"_blank\">http://127.0.0.1:35991/status</a>\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Memory: </strong> 1.27 GiB\n",
       "                        </td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Nanny: </strong> tcp://127.0.0.1:36277\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\"></td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td colspan=\"2\" style=\"text-align: left;\">\n",
       "                            <strong>Local directory: </strong> /tmp/dask-scratch-space/worker-nq82av5q\n",
       "                        </td>\n",
       "                    </tr>\n",
       "\n",
       "                    \n",
       "\n",
       "                    \n",
       "\n",
       "                </table>\n",
       "            </details>\n",
       "            </div>\n",
       "        </div>\n",
       "        \n",
       "        <div style=\"margin-bottom: 20px;\">\n",
       "            <div style=\"width: 24px; height: 24px; background-color: #DBF5FF; border: 3px solid #4CC9FF; border-radius: 5px; position: absolute;\"> </div>\n",
       "            <div style=\"margin-left: 48px;\">\n",
       "            <details>\n",
       "                <summary>\n",
       "                    <h4 style=\"margin-bottom: 0px; display: inline;\">Worker: 6</h4>\n",
       "                </summary>\n",
       "                <table style=\"width: 100%; text-align: left;\">\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Comm: </strong> tcp://127.0.0.1:43527\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Total threads: </strong> 1\n",
       "                        </td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Dashboard: </strong> <a href=\"http://127.0.0.1:42027/status\" target=\"_blank\">http://127.0.0.1:42027/status</a>\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Memory: </strong> 1.27 GiB\n",
       "                        </td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Nanny: </strong> tcp://127.0.0.1:46821\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\"></td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td colspan=\"2\" style=\"text-align: left;\">\n",
       "                            <strong>Local directory: </strong> /tmp/dask-scratch-space/worker-eh5d023d\n",
       "                        </td>\n",
       "                    </tr>\n",
       "\n",
       "                    \n",
       "\n",
       "                    \n",
       "\n",
       "                </table>\n",
       "            </details>\n",
       "            </div>\n",
       "        </div>\n",
       "        \n",
       "        <div style=\"margin-bottom: 20px;\">\n",
       "            <div style=\"width: 24px; height: 24px; background-color: #DBF5FF; border: 3px solid #4CC9FF; border-radius: 5px; position: absolute;\"> </div>\n",
       "            <div style=\"margin-left: 48px;\">\n",
       "            <details>\n",
       "                <summary>\n",
       "                    <h4 style=\"margin-bottom: 0px; display: inline;\">Worker: 7</h4>\n",
       "                </summary>\n",
       "                <table style=\"width: 100%; text-align: left;\">\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Comm: </strong> tcp://127.0.0.1:36929\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Total threads: </strong> 1\n",
       "                        </td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Dashboard: </strong> <a href=\"http://127.0.0.1:32829/status\" target=\"_blank\">http://127.0.0.1:32829/status</a>\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Memory: </strong> 1.27 GiB\n",
       "                        </td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Nanny: </strong> tcp://127.0.0.1:37841\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\"></td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td colspan=\"2\" style=\"text-align: left;\">\n",
       "                            <strong>Local directory: </strong> /tmp/dask-scratch-space/worker-be1ry_8r\n",
       "                        </td>\n",
       "                    </tr>\n",
       "\n",
       "                    \n",
       "\n",
       "                    \n",
       "\n",
       "                </table>\n",
       "            </details>\n",
       "            </div>\n",
       "        </div>\n",
       "        \n",
       "        <div style=\"margin-bottom: 20px;\">\n",
       "            <div style=\"width: 24px; height: 24px; background-color: #DBF5FF; border: 3px solid #4CC9FF; border-radius: 5px; position: absolute;\"> </div>\n",
       "            <div style=\"margin-left: 48px;\">\n",
       "            <details>\n",
       "                <summary>\n",
       "                    <h4 style=\"margin-bottom: 0px; display: inline;\">Worker: 8</h4>\n",
       "                </summary>\n",
       "                <table style=\"width: 100%; text-align: left;\">\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Comm: </strong> tcp://127.0.0.1:39893\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Total threads: </strong> 1\n",
       "                        </td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Dashboard: </strong> <a href=\"http://127.0.0.1:43143/status\" target=\"_blank\">http://127.0.0.1:43143/status</a>\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Memory: </strong> 1.27 GiB\n",
       "                        </td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Nanny: </strong> tcp://127.0.0.1:37707\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\"></td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td colspan=\"2\" style=\"text-align: left;\">\n",
       "                            <strong>Local directory: </strong> /tmp/dask-scratch-space/worker-xg7dapke\n",
       "                        </td>\n",
       "                    </tr>\n",
       "\n",
       "                    \n",
       "\n",
       "                    \n",
       "\n",
       "                </table>\n",
       "            </details>\n",
       "            </div>\n",
       "        </div>\n",
       "        \n",
       "        <div style=\"margin-bottom: 20px;\">\n",
       "            <div style=\"width: 24px; height: 24px; background-color: #DBF5FF; border: 3px solid #4CC9FF; border-radius: 5px; position: absolute;\"> </div>\n",
       "            <div style=\"margin-left: 48px;\">\n",
       "            <details>\n",
       "                <summary>\n",
       "                    <h4 style=\"margin-bottom: 0px; display: inline;\">Worker: 9</h4>\n",
       "                </summary>\n",
       "                <table style=\"width: 100%; text-align: left;\">\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Comm: </strong> tcp://127.0.0.1:39555\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Total threads: </strong> 1\n",
       "                        </td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Dashboard: </strong> <a href=\"http://127.0.0.1:32807/status\" target=\"_blank\">http://127.0.0.1:32807/status</a>\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Memory: </strong> 1.27 GiB\n",
       "                        </td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Nanny: </strong> tcp://127.0.0.1:41309\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\"></td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td colspan=\"2\" style=\"text-align: left;\">\n",
       "                            <strong>Local directory: </strong> /tmp/dask-scratch-space/worker-8lf6c_2k\n",
       "                        </td>\n",
       "                    </tr>\n",
       "\n",
       "                    \n",
       "\n",
       "                    \n",
       "\n",
       "                </table>\n",
       "            </details>\n",
       "            </div>\n",
       "        </div>\n",
       "        \n",
       "        <div style=\"margin-bottom: 20px;\">\n",
       "            <div style=\"width: 24px; height: 24px; background-color: #DBF5FF; border: 3px solid #4CC9FF; border-radius: 5px; position: absolute;\"> </div>\n",
       "            <div style=\"margin-left: 48px;\">\n",
       "            <details>\n",
       "                <summary>\n",
       "                    <h4 style=\"margin-bottom: 0px; display: inline;\">Worker: 10</h4>\n",
       "                </summary>\n",
       "                <table style=\"width: 100%; text-align: left;\">\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Comm: </strong> tcp://127.0.0.1:42853\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Total threads: </strong> 1\n",
       "                        </td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Dashboard: </strong> <a href=\"http://127.0.0.1:37649/status\" target=\"_blank\">http://127.0.0.1:37649/status</a>\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Memory: </strong> 1.27 GiB\n",
       "                        </td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Nanny: </strong> tcp://127.0.0.1:36079\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\"></td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td colspan=\"2\" style=\"text-align: left;\">\n",
       "                            <strong>Local directory: </strong> /tmp/dask-scratch-space/worker-fwtn1xyx\n",
       "                        </td>\n",
       "                    </tr>\n",
       "\n",
       "                    \n",
       "\n",
       "                    \n",
       "\n",
       "                </table>\n",
       "            </details>\n",
       "            </div>\n",
       "        </div>\n",
       "        \n",
       "        <div style=\"margin-bottom: 20px;\">\n",
       "            <div style=\"width: 24px; height: 24px; background-color: #DBF5FF; border: 3px solid #4CC9FF; border-radius: 5px; position: absolute;\"> </div>\n",
       "            <div style=\"margin-left: 48px;\">\n",
       "            <details>\n",
       "                <summary>\n",
       "                    <h4 style=\"margin-bottom: 0px; display: inline;\">Worker: 11</h4>\n",
       "                </summary>\n",
       "                <table style=\"width: 100%; text-align: left;\">\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Comm: </strong> tcp://127.0.0.1:44609\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Total threads: </strong> 1\n",
       "                        </td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Dashboard: </strong> <a href=\"http://127.0.0.1:37923/status\" target=\"_blank\">http://127.0.0.1:37923/status</a>\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Memory: </strong> 1.27 GiB\n",
       "                        </td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td style=\"text-align: left;\">\n",
       "                            <strong>Nanny: </strong> tcp://127.0.0.1:36963\n",
       "                        </td>\n",
       "                        <td style=\"text-align: left;\"></td>\n",
       "                    </tr>\n",
       "                    <tr>\n",
       "                        <td colspan=\"2\" style=\"text-align: left;\">\n",
       "                            <strong>Local directory: </strong> /tmp/dask-scratch-space/worker-tjnalsqx\n",
       "                        </td>\n",
       "                    </tr>\n",
       "\n",
       "                    \n",
       "\n",
       "                    \n",
       "\n",
       "                </table>\n",
       "            </details>\n",
       "            </div>\n",
       "        </div>\n",
       "        \n",
       "\n",
       "    </details>\n",
       "</div>\n",
       "\n",
       "        </details>\n",
       "    </div>\n",
       "</div>\n",
       "            </details>\n",
       "        \n",
       "\n",
       "    </div>\n",
       "</div>"
      ],
      "text/plain": [
       "<Client: 'tcp://127.0.0.1:43953' processes=12 threads=12, memory=15.27 GiB>"
      ]
     },
     "execution_count": 2,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "# Prepare a dask cluster and client\n",
    "cluster = LocalCluster(n_workers=12, threads_per_worker=1)\n",
    "client = Client(cluster)\n",
    "client"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {
    "notebookRunGroups": {
     "groupValue": "1"
    }
   },
   "outputs": [],
   "source": [
    "# Create an MTPy object with the client\n",
    "mpt = MeltpoolTomography(client=client)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "notebookRunGroups": {
     "groupValue": "1"
    }
   },
   "outputs": [],
   "source": [
    "# Read the aconity data\n",
    "mpt.read_layers(\"data/pyrometry_data\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "notebookRunGroups": {
     "groupValue": "1"
    }
   },
   "outputs": [],
   "source": [
    "# Examine the raw data\n",
    "raw_plot = mpt.scatter2d()\n",
    "raw_plot"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {
    "notebookRunGroups": {
     "groupValue": "1"
    }
   },
   "outputs": [],
   "source": [
    "# Import the pre-prepared masks\n",
    "with open(\"data/masks2.pkl\", \"rb\") as f:\n",
    "    masks = pickle.load(f)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "notebookRunGroups": {
     "groupValue": "1"
    }
   },
   "outputs": [],
   "source": [
    "# Apply the masks\n",
    "mpt.rotate_xy(-45.0)\n",
    "mpt.mask_xyrectangles(masks)\n",
    "mpt.rotate_xy(45.0)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "notebookRunGroups": {
     "groupValue": "1"
    }
   },
   "outputs": [],
   "source": [
    "# Compare the raw and masked data\n",
    "mpt.scatter2d() + raw_plot"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {
    "notebookRunGroups": {
     "groupValue": "1"
    }
   },
   "outputs": [],
   "source": [
    "# Add a time column to the data\n",
    "delta_time = 0.0001  # 10kHz sampling rate\n",
    "mpt.data[\"time\"] = mpt.data.index * delta_time"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "notebookRunGroups": {
     "groupValue": "1"
    }
   },
   "outputs": [],
   "source": [
    "# Save data for use in the experiment\n",
    "mpt.save(\"checkpoint.mtp\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div><strong>Dask DataFrame Structure:</strong></div>\n",
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>x</th>\n",
       "      <th>y</th>\n",
       "      <th>z</th>\n",
       "      <th>t</th>\n",
       "      <th>sample</th>\n",
       "      <th>time</th>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>npartitions=46</th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th></th>\n",
       "      <td>float64</td>\n",
       "      <td>float64</td>\n",
       "      <td>float64</td>\n",
       "      <td>float64</td>\n",
       "      <td>int64</td>\n",
       "      <td>float64</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th></th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
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       "    <tr>\n",
       "      <th></th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th></th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>\n",
       "<div>Dask Name: read-parquet, 1 graph layer</div>"
      ],
      "text/plain": [
       "Dask DataFrame Structure:\n",
       "                      x        y        z        t sample     time\n",
       "npartitions=46                                                    \n",
       "                float64  float64  float64  float64  int64  float64\n",
       "                    ...      ...      ...      ...    ...      ...\n",
       "...                 ...      ...      ...      ...    ...      ...\n",
       "                    ...      ...      ...      ...    ...      ...\n",
       "                    ...      ...      ...      ...    ...      ...\n",
       "Dask Name: read-parquet, 1 graph layer"
      ]
     },
     "execution_count": 7,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "mpt.data"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {
    "notebookRunGroups": {
     "groupValue": "1"
    }
   },
   "outputs": [
    {
     "data": {
      "application/vnd.jupyter.widget-view+json": {
       "model_id": "6f5322186afc455c8909c0f510b1ede7",
       "version_major": 2,
       "version_minor": 0
      },
      "text/plain": [
       "  0%|          | 0/81 [00:00<?, ?it/s]"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Task exception was never retrieved\n",
      "future: <Task finished name='Task-1318357' coro=<Client._gather.<locals>.wait() done, defined at /home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2212> exception=AllExit()>\n",
      "Traceback (most recent call last):\n",
      "  File \"/home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py\", line 2221, in wait\n",
      "    raise AllExit()\n",
      "distributed.client.AllExit\n",
      "Task exception was never retrieved\n",
      "future: <Task finished name='Task-1318370' coro=<Client._gather.<locals>.wait() done, defined at /home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2212> exception=AllExit()>\n",
      "Traceback (most recent call last):\n",
      "  File \"/home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py\", line 2221, in wait\n",
      "    raise AllExit()\n",
      "distributed.client.AllExit\n",
      "Task exception was never retrieved\n",
      "future: <Task finished name='Task-1318399' coro=<Client._gather.<locals>.wait() done, defined at /home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2212> exception=AllExit()>\n",
      "Traceback (most recent call last):\n",
      "  File \"/home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py\", line 2221, in wait\n",
      "    raise AllExit()\n",
      "distributed.client.AllExit\n",
      "Task exception was never retrieved\n",
      "future: <Task finished name='Task-1318364' coro=<Client._gather.<locals>.wait() done, defined at /home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2212> exception=AllExit()>\n",
      "Traceback (most recent call last):\n",
      "  File \"/home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py\", line 2221, in wait\n",
      "    raise AllExit()\n",
      "distributed.client.AllExit\n",
      "Task exception was never retrieved\n",
      "future: <Task finished name='Task-1318387' coro=<Client._gather.<locals>.wait() done, defined at /home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2212> exception=AllExit()>\n",
      "Traceback (most recent call last):\n",
      "  File \"/home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py\", line 2221, in wait\n",
      "    raise AllExit()\n",
      "distributed.client.AllExit\n",
      "Task exception was never retrieved\n",
      "future: <Task finished name='Task-1318368' coro=<Client._gather.<locals>.wait() done, defined at /home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2212> exception=AllExit()>\n",
      "Traceback (most recent call last):\n",
      "  File \"/home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py\", line 2221, in wait\n",
      "    raise AllExit()\n",
      "distributed.client.AllExit\n",
      "Task exception was never retrieved\n",
      "future: <Task finished name='Task-1318388' coro=<Client._gather.<locals>.wait() done, defined at /home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2212> exception=AllExit()>\n",
      "Traceback (most recent call last):\n",
      "  File \"/home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py\", line 2221, in wait\n",
      "    raise AllExit()\n",
      "distributed.client.AllExit\n",
      "Task exception was never retrieved\n",
      "future: <Task finished name='Task-1318362' coro=<Client._gather.<locals>.wait() done, defined at /home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2212> exception=AllExit()>\n",
      "Traceback (most recent call last):\n",
      "  File \"/home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py\", line 2221, in wait\n",
      "    raise AllExit()\n",
      "distributed.client.AllExit\n",
      "Task exception was never retrieved\n",
      "future: <Task finished name='Task-1318379' coro=<Client._gather.<locals>.wait() done, defined at /home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2212> exception=AllExit()>\n",
      "Traceback (most recent call last):\n",
      "  File \"/home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py\", line 2221, in wait\n",
      "    raise AllExit()\n",
      "distributed.client.AllExit\n",
      "Task exception was never retrieved\n",
      "future: <Task finished name='Task-1318386' coro=<Client._gather.<locals>.wait() done, defined at /home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2212> exception=AllExit()>\n",
      "Traceback (most recent call last):\n",
      "  File \"/home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py\", line 2221, in wait\n",
      "    raise AllExit()\n",
      "distributed.client.AllExit\n",
      "Task exception was never retrieved\n",
      "future: <Task finished name='Task-1318365' coro=<Client._gather.<locals>.wait() done, defined at /home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2212> exception=AllExit()>\n",
      "Traceback (most recent call last):\n",
      "  File \"/home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py\", line 2221, in wait\n",
      "    raise AllExit()\n",
      "distributed.client.AllExit\n",
      "Task exception was never retrieved\n",
      "future: <Task finished name='Task-1318358' coro=<Client._gather.<locals>.wait() done, defined at /home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2212> exception=AllExit()>\n",
      "Traceback (most recent call last):\n",
      "  File \"/home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py\", line 2221, in wait\n",
      "    raise AllExit()\n",
      "distributed.client.AllExit\n",
      "Task exception was never retrieved\n",
      "future: <Task finished name='Task-1318393' coro=<Client._gather.<locals>.wait() done, defined at /home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2212> exception=AllExit()>\n",
      "Traceback (most recent call last):\n",
      "  File \"/home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py\", line 2221, in wait\n",
      "    raise AllExit()\n",
      "distributed.client.AllExit\n",
      "Task exception was never retrieved\n",
      "future: <Task finished name='Task-1318394' coro=<Client._gather.<locals>.wait() done, defined at /home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2212> exception=AllExit()>\n",
      "Traceback (most recent call last):\n",
      "  File \"/home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py\", line 2221, in wait\n",
      "    raise AllExit()\n",
      "distributed.client.AllExit\n",
      "Task exception was never retrieved\n",
      "future: <Task finished name='Task-1318371' coro=<Client._gather.<locals>.wait() done, defined at /home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2212> exception=AllExit()>\n",
      "Traceback (most recent call last):\n",
      "  File \"/home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py\", line 2221, in wait\n",
      "    raise AllExit()\n",
      "distributed.client.AllExit\n",
      "Task exception was never retrieved\n",
      "future: <Task finished name='Task-1318361' coro=<Client._gather.<locals>.wait() done, defined at /home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2212> exception=AllExit()>\n",
      "Traceback (most recent call last):\n",
      "  File \"/home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py\", line 2221, in wait\n",
      "    raise AllExit()\n",
      "distributed.client.AllExit\n",
      "Task exception was never retrieved\n",
      "future: <Task finished name='Task-1318383' coro=<Client._gather.<locals>.wait() done, defined at /home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2212> exception=AllExit()>\n",
      "Traceback (most recent call last):\n",
      "  File \"/home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py\", line 2221, in wait\n",
      "    raise AllExit()\n",
      "distributed.client.AllExit\n",
      "Task exception was never retrieved\n",
      "future: <Task finished name='Task-1318366' coro=<Client._gather.<locals>.wait() done, defined at /home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2212> exception=AllExit()>\n",
      "Traceback (most recent call last):\n",
      "  File \"/home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py\", line 2221, in wait\n",
      "    raise AllExit()\n",
      "distributed.client.AllExit\n",
      "Task exception was never retrieved\n",
      "future: <Task finished name='Task-1318355' coro=<Client._gather.<locals>.wait() done, defined at /home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2212> exception=AllExit()>\n",
      "Traceback (most recent call last):\n",
      "  File \"/home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py\", line 2221, in wait\n",
      "    raise AllExit()\n",
      "distributed.client.AllExit\n",
      "Task exception was never retrieved\n",
      "future: <Task finished name='Task-1318377' coro=<Client._gather.<locals>.wait() done, defined at /home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2212> exception=AllExit()>\n",
      "Traceback (most recent call last):\n",
      "  File \"/home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py\", line 2221, in wait\n",
      "    raise AllExit()\n",
      "distributed.client.AllExit\n",
      "Task exception was never retrieved\n",
      "future: <Task finished name='Task-1318376' coro=<Client._gather.<locals>.wait() done, defined at /home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2212> exception=AllExit()>\n",
      "Traceback (most recent call last):\n",
      "  File \"/home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py\", line 2221, in wait\n",
      "    raise AllExit()\n",
      "distributed.client.AllExit\n",
      "Task exception was never retrieved\n",
      "future: <Task finished name='Task-1318356' coro=<Client._gather.<locals>.wait() done, defined at /home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2212> exception=AllExit()>\n",
      "Traceback (most recent call last):\n",
      "  File \"/home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py\", line 2221, in wait\n",
      "    raise AllExit()\n",
      "distributed.client.AllExit\n",
      "Task exception was never retrieved\n",
      "future: <Task finished name='Task-1318380' coro=<Client._gather.<locals>.wait() done, defined at /home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2212> exception=AllExit()>\n",
      "Traceback (most recent call last):\n",
      "  File \"/home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py\", line 2221, in wait\n",
      "    raise AllExit()\n",
      "distributed.client.AllExit\n",
      "Task exception was never retrieved\n",
      "future: <Task finished name='Task-1318359' coro=<Client._gather.<locals>.wait() done, defined at /home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2212> exception=AllExit()>\n",
      "Traceback (most recent call last):\n",
      "  File \"/home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py\", line 2221, in wait\n",
      "    raise AllExit()\n",
      "distributed.client.AllExit\n",
      "Task exception was never retrieved\n",
      "future: <Task finished name='Task-1318363' coro=<Client._gather.<locals>.wait() done, defined at /home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2212> exception=AllExit()>\n",
      "Traceback (most recent call last):\n",
      "  File \"/home/cianh/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py\", line 2221, in wait\n",
      "    raise AllExit()\n",
      "distributed.client.AllExit\n"
     ]
    },
    {
     "ename": "KeyboardInterrupt",
     "evalue": "",
     "output_type": "error",
     "traceback": [
      "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
      "\u001b[0;31mKeyboardInterrupt\u001b[0m                         Traceback (most recent call last)",
      "Cell \u001b[0;32mIn[8], line 3\u001b[0m\n\u001b[1;32m      1\u001b[0m samples \u001b[39m=\u001b[39m mpt\u001b[39m.\u001b[39mdata[\u001b[39m\"\u001b[39m\u001b[39msample\u001b[39m\u001b[39m\"\u001b[39m]\u001b[39m.\u001b[39munique()\u001b[39m.\u001b[39mcompute()\n\u001b[0;32m----> 3\u001b[0m \u001b[39mfor\u001b[39;00m future \u001b[39min\u001b[39;00m tqdm(\n\u001b[1;32m      4\u001b[0m     (\n\u001b[1;32m      5\u001b[0m         mpt\u001b[39m.\u001b[39mdata\u001b[39m.\u001b[39mloc[mpt\u001b[39m.\u001b[39mdata[\u001b[39m\"\u001b[39m\u001b[39msample\u001b[39m\u001b[39m\"\u001b[39m] \u001b[39m==\u001b[39m sample_num]\n\u001b[1;32m      6\u001b[0m         \u001b[39m.\u001b[39mdrop(\u001b[39m\"\u001b[39m\u001b[39msample\u001b[39m\u001b[39m\"\u001b[39m, axis\u001b[39m=\u001b[39m\u001b[39m1\u001b[39m)\n\u001b[1;32m      7\u001b[0m         \u001b[39m.\u001b[39mastype(\u001b[39m\"\u001b[39m\u001b[39mfloat32\u001b[39m\u001b[39m\"\u001b[39m)\n\u001b[1;32m      8\u001b[0m         \u001b[39m.\u001b[39mrepartition(\n\u001b[1;32m      9\u001b[0m             partition_size\u001b[39m=\u001b[39m\u001b[39m\"\u001b[39m\u001b[39m10MB\u001b[39m\u001b[39m\"\u001b[39m\n\u001b[1;32m     10\u001b[0m         )  \u001b[39m# Break up into small chunks ingestible by an ML model\u001b[39;00m\n\u001b[1;32m     11\u001b[0m         \u001b[39m.\u001b[39mto_parquet(\n\u001b[1;32m     12\u001b[0m             \u001b[39mf\u001b[39m\u001b[39m\"\u001b[39m\u001b[39msample_X/\u001b[39m\u001b[39m{\u001b[39;00msample_num\u001b[39m}\u001b[39;00m\u001b[39m\"\u001b[39m,\n\u001b[1;32m     13\u001b[0m             compression\u001b[39m=\u001b[39m\u001b[39m\"\u001b[39m\u001b[39mlz4\u001b[39m\u001b[39m\"\u001b[39m,\n\u001b[1;32m     14\u001b[0m             write_metadata_file\u001b[39m=\u001b[39m\u001b[39mTrue\u001b[39;00m,\n\u001b[1;32m     15\u001b[0m             compute\u001b[39m=\u001b[39m\u001b[39mFalse\u001b[39;00m,\n\u001b[1;32m     16\u001b[0m         )\n\u001b[1;32m     17\u001b[0m         \u001b[39mfor\u001b[39;00m sample_num \u001b[39min\u001b[39;00m samples\n\u001b[1;32m     18\u001b[0m     ),\n\u001b[1;32m     19\u001b[0m     total\u001b[39m=\u001b[39m\u001b[39mlen\u001b[39m(samples),\n\u001b[1;32m     20\u001b[0m ):\n\u001b[1;32m     21\u001b[0m     future\u001b[39m.\u001b[39mcompute()\n",
      "File \u001b[0;32m~/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/tqdm/notebook.py:254\u001b[0m, in \u001b[0;36mtqdm_notebook.__iter__\u001b[0;34m(self)\u001b[0m\n\u001b[1;32m    252\u001b[0m \u001b[39mtry\u001b[39;00m:\n\u001b[1;32m    253\u001b[0m     it \u001b[39m=\u001b[39m \u001b[39msuper\u001b[39m(tqdm_notebook, \u001b[39mself\u001b[39m)\u001b[39m.\u001b[39m\u001b[39m__iter__\u001b[39m()\n\u001b[0;32m--> 254\u001b[0m     \u001b[39mfor\u001b[39;00m obj \u001b[39min\u001b[39;00m it:\n\u001b[1;32m    255\u001b[0m         \u001b[39m# return super(tqdm...) will not catch exception\u001b[39;00m\n\u001b[1;32m    256\u001b[0m         \u001b[39myield\u001b[39;00m obj\n\u001b[1;32m    257\u001b[0m \u001b[39m# NB: except ... [ as ...] breaks IPython async KeyboardInterrupt\u001b[39;00m\n",
      "File \u001b[0;32m~/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/tqdm/std.py:1178\u001b[0m, in \u001b[0;36mtqdm.__iter__\u001b[0;34m(self)\u001b[0m\n\u001b[1;32m   1175\u001b[0m time \u001b[39m=\u001b[39m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39m_time\n\u001b[1;32m   1177\u001b[0m \u001b[39mtry\u001b[39;00m:\n\u001b[0;32m-> 1178\u001b[0m     \u001b[39mfor\u001b[39;00m obj \u001b[39min\u001b[39;00m iterable:\n\u001b[1;32m   1179\u001b[0m         \u001b[39myield\u001b[39;00m obj\n\u001b[1;32m   1180\u001b[0m         \u001b[39m# Update and possibly print the progressbar.\u001b[39;00m\n\u001b[1;32m   1181\u001b[0m         \u001b[39m# Note: does not call self.update(1) for speed optimisation.\u001b[39;00m\n",
      "Cell \u001b[0;32mIn[8], line 8\u001b[0m, in \u001b[0;36m<genexpr>\u001b[0;34m(.0)\u001b[0m\n\u001b[1;32m      1\u001b[0m samples \u001b[39m=\u001b[39m mpt\u001b[39m.\u001b[39mdata[\u001b[39m\"\u001b[39m\u001b[39msample\u001b[39m\u001b[39m\"\u001b[39m]\u001b[39m.\u001b[39munique()\u001b[39m.\u001b[39mcompute()\n\u001b[1;32m      3\u001b[0m \u001b[39mfor\u001b[39;00m future \u001b[39min\u001b[39;00m tqdm(\n\u001b[1;32m      4\u001b[0m     (\n\u001b[1;32m      5\u001b[0m         mpt\u001b[39m.\u001b[39;49mdata\u001b[39m.\u001b[39;49mloc[mpt\u001b[39m.\u001b[39;49mdata[\u001b[39m\"\u001b[39;49m\u001b[39msample\u001b[39;49m\u001b[39m\"\u001b[39;49m] \u001b[39m==\u001b[39;49m sample_num]\n\u001b[1;32m      6\u001b[0m         \u001b[39m.\u001b[39;49mdrop(\u001b[39m\"\u001b[39;49m\u001b[39msample\u001b[39;49m\u001b[39m\"\u001b[39;49m, axis\u001b[39m=\u001b[39;49m\u001b[39m1\u001b[39;49m)\n\u001b[1;32m      7\u001b[0m         \u001b[39m.\u001b[39;49mastype(\u001b[39m\"\u001b[39;49m\u001b[39mfloat32\u001b[39;49m\u001b[39m\"\u001b[39;49m)\n\u001b[0;32m----> 8\u001b[0m         \u001b[39m.\u001b[39;49mrepartition(\n\u001b[1;32m      9\u001b[0m             partition_size\u001b[39m=\u001b[39;49m\u001b[39m\"\u001b[39;49m\u001b[39m10MB\u001b[39;49m\u001b[39m\"\u001b[39;49m\n\u001b[1;32m     10\u001b[0m         )  \u001b[39m# Break up into small chunks ingestible by an ML model\u001b[39;00m\n\u001b[1;32m     11\u001b[0m         \u001b[39m.\u001b[39mto_parquet(\n\u001b[1;32m     12\u001b[0m             \u001b[39mf\u001b[39m\u001b[39m\"\u001b[39m\u001b[39msample_X/\u001b[39m\u001b[39m{\u001b[39;00msample_num\u001b[39m}\u001b[39;00m\u001b[39m\"\u001b[39m,\n\u001b[1;32m     13\u001b[0m             compression\u001b[39m=\u001b[39m\u001b[39m\"\u001b[39m\u001b[39mlz4\u001b[39m\u001b[39m\"\u001b[39m,\n\u001b[1;32m     14\u001b[0m             write_metadata_file\u001b[39m=\u001b[39m\u001b[39mTrue\u001b[39;00m,\n\u001b[1;32m     15\u001b[0m             compute\u001b[39m=\u001b[39m\u001b[39mFalse\u001b[39;00m,\n\u001b[1;32m     16\u001b[0m         )\n\u001b[1;32m     17\u001b[0m         \u001b[39mfor\u001b[39;00m sample_num \u001b[39min\u001b[39;00m samples\n\u001b[1;32m     18\u001b[0m     ),\n\u001b[1;32m     19\u001b[0m     total\u001b[39m=\u001b[39m\u001b[39mlen\u001b[39m(samples),\n\u001b[1;32m     20\u001b[0m ):\n\u001b[1;32m     21\u001b[0m     future\u001b[39m.\u001b[39mcompute()\n",
      "File \u001b[0;32m~/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/dask/dataframe/core.py:1598\u001b[0m, in \u001b[0;36m_Frame.repartition\u001b[0;34m(self, divisions, npartitions, partition_size, freq, force)\u001b[0m\n\u001b[1;32m   1592\u001b[0m     \u001b[39mraise\u001b[39;00m \u001b[39mValueError\u001b[39;00m(\n\u001b[1;32m   1593\u001b[0m         \u001b[39m\"\u001b[39m\u001b[39mPlease provide exactly one of ``npartitions=``, ``freq=``, \u001b[39m\u001b[39m\"\u001b[39m\n\u001b[1;32m   1594\u001b[0m         \u001b[39m\"\u001b[39m\u001b[39m``divisions=``, ``partition_size=`` keyword arguments\u001b[39m\u001b[39m\"\u001b[39m\n\u001b[1;32m   1595\u001b[0m     )\n\u001b[1;32m   1597\u001b[0m \u001b[39mif\u001b[39;00m partition_size \u001b[39mis\u001b[39;00m \u001b[39mnot\u001b[39;00m \u001b[39mNone\u001b[39;00m:\n\u001b[0;32m-> 1598\u001b[0m     \u001b[39mreturn\u001b[39;00m repartition_size(\u001b[39mself\u001b[39;49m, partition_size)\n\u001b[1;32m   1599\u001b[0m \u001b[39melif\u001b[39;00m npartitions \u001b[39mis\u001b[39;00m \u001b[39mnot\u001b[39;00m \u001b[39mNone\u001b[39;00m:\n\u001b[1;32m   1600\u001b[0m     \u001b[39mreturn\u001b[39;00m repartition_npartitions(\u001b[39mself\u001b[39m, npartitions)\n",
      "File \u001b[0;32m~/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/dask/dataframe/core.py:7784\u001b[0m, in \u001b[0;36mrepartition_size\u001b[0;34m(df, size)\u001b[0m\n\u001b[1;32m   7781\u001b[0m     size \u001b[39m=\u001b[39m parse_bytes(size)\n\u001b[1;32m   7782\u001b[0m size \u001b[39m=\u001b[39m \u001b[39mint\u001b[39m(size)\n\u001b[0;32m-> 7784\u001b[0m mem_usages \u001b[39m=\u001b[39m df\u001b[39m.\u001b[39;49mmap_partitions(total_mem_usage, deep\u001b[39m=\u001b[39;49m\u001b[39mTrue\u001b[39;49;00m)\u001b[39m.\u001b[39;49mcompute()\n\u001b[1;32m   7786\u001b[0m \u001b[39m# 1. split each partition that is larger than partition_size\u001b[39;00m\n\u001b[1;32m   7787\u001b[0m nsplits \u001b[39m=\u001b[39m \u001b[39m1\u001b[39m \u001b[39m+\u001b[39m mem_usages \u001b[39m/\u001b[39m\u001b[39m/\u001b[39m size\n",
      "File \u001b[0;32m~/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/dask/base.py:381\u001b[0m, in \u001b[0;36mDaskMethodsMixin.compute\u001b[0;34m(self, **kwargs)\u001b[0m\n\u001b[1;32m    357\u001b[0m \u001b[39mdef\u001b[39;00m \u001b[39mcompute\u001b[39m(\u001b[39mself\u001b[39m, \u001b[39m*\u001b[39m\u001b[39m*\u001b[39mkwargs):\n\u001b[1;32m    358\u001b[0m \u001b[39m    \u001b[39m\u001b[39m\"\"\"Compute this dask collection\u001b[39;00m\n\u001b[1;32m    359\u001b[0m \n\u001b[1;32m    360\u001b[0m \u001b[39m    This turns a lazy Dask collection into its in-memory equivalent.\u001b[39;00m\n\u001b[0;32m   (...)\u001b[0m\n\u001b[1;32m    379\u001b[0m \u001b[39m    dask.compute\u001b[39;00m\n\u001b[1;32m    380\u001b[0m \u001b[39m    \"\"\"\u001b[39;00m\n\u001b[0;32m--> 381\u001b[0m     (result,) \u001b[39m=\u001b[39m compute(\u001b[39mself\u001b[39;49m, traverse\u001b[39m=\u001b[39;49m\u001b[39mFalse\u001b[39;49;00m, \u001b[39m*\u001b[39;49m\u001b[39m*\u001b[39;49mkwargs)\n\u001b[1;32m    382\u001b[0m     \u001b[39mreturn\u001b[39;00m result\n",
      "File \u001b[0;32m~/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/dask/base.py:666\u001b[0m, in \u001b[0;36mcompute\u001b[0;34m(traverse, optimize_graph, scheduler, get, *args, **kwargs)\u001b[0m\n\u001b[1;32m    663\u001b[0m     keys\u001b[39m.\u001b[39mappend(x\u001b[39m.\u001b[39m__dask_keys__())\n\u001b[1;32m    664\u001b[0m     postcomputes\u001b[39m.\u001b[39mappend(x\u001b[39m.\u001b[39m__dask_postcompute__())\n\u001b[0;32m--> 666\u001b[0m results \u001b[39m=\u001b[39m schedule(dsk, keys, \u001b[39m*\u001b[39;49m\u001b[39m*\u001b[39;49mkwargs)\n\u001b[1;32m    667\u001b[0m \u001b[39mreturn\u001b[39;00m repack([f(r, \u001b[39m*\u001b[39ma) \u001b[39mfor\u001b[39;00m r, (f, a) \u001b[39min\u001b[39;00m \u001b[39mzip\u001b[39m(results, postcomputes)])\n",
      "File \u001b[0;32m~/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:3259\u001b[0m, in \u001b[0;36mClient.get\u001b[0;34m(self, dsk, keys, workers, allow_other_workers, resources, sync, asynchronous, direct, retries, priority, fifo_timeout, actors, **kwargs)\u001b[0m\n\u001b[1;32m   3257\u001b[0m         should_rejoin \u001b[39m=\u001b[39m \u001b[39mFalse\u001b[39;00m\n\u001b[1;32m   3258\u001b[0m \u001b[39mtry\u001b[39;00m:\n\u001b[0;32m-> 3259\u001b[0m     results \u001b[39m=\u001b[39m \u001b[39mself\u001b[39;49m\u001b[39m.\u001b[39;49mgather(packed, asynchronous\u001b[39m=\u001b[39;49masynchronous, direct\u001b[39m=\u001b[39;49mdirect)\n\u001b[1;32m   3260\u001b[0m \u001b[39mfinally\u001b[39;00m:\n\u001b[1;32m   3261\u001b[0m     \u001b[39mfor\u001b[39;00m f \u001b[39min\u001b[39;00m futures\u001b[39m.\u001b[39mvalues():\n",
      "File \u001b[0;32m~/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/client.py:2384\u001b[0m, in \u001b[0;36mClient.gather\u001b[0;34m(self, futures, errors, direct, asynchronous)\u001b[0m\n\u001b[1;32m   2382\u001b[0m \u001b[39mexcept\u001b[39;00m \u001b[39mValueError\u001b[39;00m:\n\u001b[1;32m   2383\u001b[0m     local_worker \u001b[39m=\u001b[39m \u001b[39mNone\u001b[39;00m\n\u001b[0;32m-> 2384\u001b[0m \u001b[39mreturn\u001b[39;00m \u001b[39mself\u001b[39;49m\u001b[39m.\u001b[39;49msync(\n\u001b[1;32m   2385\u001b[0m     \u001b[39mself\u001b[39;49m\u001b[39m.\u001b[39;49m_gather,\n\u001b[1;32m   2386\u001b[0m     futures,\n\u001b[1;32m   2387\u001b[0m     errors\u001b[39m=\u001b[39;49merrors,\n\u001b[1;32m   2388\u001b[0m     direct\u001b[39m=\u001b[39;49mdirect,\n\u001b[1;32m   2389\u001b[0m     local_worker\u001b[39m=\u001b[39;49mlocal_worker,\n\u001b[1;32m   2390\u001b[0m     asynchronous\u001b[39m=\u001b[39;49masynchronous,\n\u001b[1;32m   2391\u001b[0m )\n",
      "File \u001b[0;32m~/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/utils.py:359\u001b[0m, in \u001b[0;36mSyncMethodMixin.sync\u001b[0;34m(self, func, asynchronous, callback_timeout, *args, **kwargs)\u001b[0m\n\u001b[1;32m    357\u001b[0m     \u001b[39mreturn\u001b[39;00m future\n\u001b[1;32m    358\u001b[0m \u001b[39melse\u001b[39;00m:\n\u001b[0;32m--> 359\u001b[0m     \u001b[39mreturn\u001b[39;00m sync(\n\u001b[1;32m    360\u001b[0m         \u001b[39mself\u001b[39;49m\u001b[39m.\u001b[39;49mloop, func, \u001b[39m*\u001b[39;49margs, callback_timeout\u001b[39m=\u001b[39;49mcallback_timeout, \u001b[39m*\u001b[39;49m\u001b[39m*\u001b[39;49mkwargs\n\u001b[1;32m    361\u001b[0m     )\n",
      "File \u001b[0;32m~/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/utils.py:422\u001b[0m, in \u001b[0;36msync\u001b[0;34m(loop, func, callback_timeout, *args, **kwargs)\u001b[0m\n\u001b[1;32m    420\u001b[0m \u001b[39melse\u001b[39;00m:\n\u001b[1;32m    421\u001b[0m     \u001b[39mwhile\u001b[39;00m \u001b[39mnot\u001b[39;00m e\u001b[39m.\u001b[39mis_set():\n\u001b[0;32m--> 422\u001b[0m         wait(\u001b[39m10\u001b[39;49m)\n\u001b[1;32m    424\u001b[0m \u001b[39mif\u001b[39;00m error:\n\u001b[1;32m    425\u001b[0m     typ, exc, tb \u001b[39m=\u001b[39m error\n",
      "File \u001b[0;32m~/Programming/Git_Projects/Aconity_ML_Test/.venv/lib/python3.11/site-packages/distributed/utils.py:411\u001b[0m, in \u001b[0;36msync.<locals>.wait\u001b[0;34m(timeout)\u001b[0m\n\u001b[1;32m    409\u001b[0m \u001b[39mdef\u001b[39;00m \u001b[39mwait\u001b[39m(timeout):\n\u001b[1;32m    410\u001b[0m     \u001b[39mtry\u001b[39;00m:\n\u001b[0;32m--> 411\u001b[0m         \u001b[39mreturn\u001b[39;00m e\u001b[39m.\u001b[39;49mwait(timeout)\n\u001b[1;32m    412\u001b[0m     \u001b[39mexcept\u001b[39;00m \u001b[39mKeyboardInterrupt\u001b[39;00m:\n\u001b[1;32m    413\u001b[0m         loop\u001b[39m.\u001b[39madd_callback(cancel)\n",
      "File \u001b[0;32m/usr/lib/python3.11/threading.py:622\u001b[0m, in \u001b[0;36mEvent.wait\u001b[0;34m(self, timeout)\u001b[0m\n\u001b[1;32m    620\u001b[0m signaled \u001b[39m=\u001b[39m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39m_flag\n\u001b[1;32m    621\u001b[0m \u001b[39mif\u001b[39;00m \u001b[39mnot\u001b[39;00m signaled:\n\u001b[0;32m--> 622\u001b[0m     signaled \u001b[39m=\u001b[39m \u001b[39mself\u001b[39;49m\u001b[39m.\u001b[39;49m_cond\u001b[39m.\u001b[39;49mwait(timeout)\n\u001b[1;32m    623\u001b[0m \u001b[39mreturn\u001b[39;00m signaled\n",
      "File \u001b[0;32m/usr/lib/python3.11/threading.py:324\u001b[0m, in \u001b[0;36mCondition.wait\u001b[0;34m(self, timeout)\u001b[0m\n\u001b[1;32m    322\u001b[0m \u001b[39melse\u001b[39;00m:\n\u001b[1;32m    323\u001b[0m     \u001b[39mif\u001b[39;00m timeout \u001b[39m>\u001b[39m \u001b[39m0\u001b[39m:\n\u001b[0;32m--> 324\u001b[0m         gotit \u001b[39m=\u001b[39m waiter\u001b[39m.\u001b[39;49macquire(\u001b[39mTrue\u001b[39;49;00m, timeout)\n\u001b[1;32m    325\u001b[0m     \u001b[39melse\u001b[39;00m:\n\u001b[1;32m    326\u001b[0m         gotit \u001b[39m=\u001b[39m waiter\u001b[39m.\u001b[39macquire(\u001b[39mFalse\u001b[39;00m)\n",
      "\u001b[0;31mKeyboardInterrupt\u001b[0m: "
     ]
    }
   ],
   "source": [
    "samples = mpt.data[\"sample\"].unique().compute()\n",
    "\n",
    "for future in tqdm(\n",
    "    (\n",
    "        mpt.data.loc[mpt.data[\"sample\"] == sample_num]\n",
    "        .drop(\"sample\", axis=1)\n",
    "        .astype(\"float32\")\n",
    "        .repartition(\n",
    "            partition_size=\"10MB\"\n",
    "        )  # Break up into small chunks ingestible by an ML model\n",
    "        .to_parquet(\n",
    "            f\"sample_X/{sample_num}\",\n",
    "            compression=\"lz4\",\n",
    "            write_metadata_file=True,\n",
    "            compute=False,\n",
    "        )\n",
    "        for sample_num in samples\n",
    "    ),\n",
    "    total=len(samples),\n",
    "):\n",
    "    future.compute()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
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