mirror of
https://github.com/Cian-H/read_aconity_layers.git
synced 2025-12-22 18:31:56 +00:00
Updated package to use most recent maturin version
Significant rewrite to allow this module to work with the most recetn version of maturin. Required dependency removal for ndarray-csv and rewrite of tests. Should future-proof for migratiosn to python3.13 in software using this library.
This commit is contained in:
19
Cargo.toml
19
Cargo.toml
@@ -1,6 +1,6 @@
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[package]
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name = "read_aconity_layers"
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version = "0.2.0"
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version = "0.3.0"
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edition = "2021"
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[lib]
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@@ -11,27 +11,20 @@ crate-type = ["cdylib"]
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csv = "*"
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glob = "*"
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indicatif = "*"
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ndarray = { version = "0.15.6", features = ["rayon"] }
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ndarray-csv = "*"
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numpy = "*"
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pyo3 = { version = "0.18.1", features = ["extension-module"] }
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ndarray = { version = "0.16.1", features = ["rayon"] }
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numpy = "0.22.0"
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pyo3 = { version = "0.22.5", features = ["extension-module"] }
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rayon = "*"
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thiserror = "1.0.60"
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[dev-dependencies]
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anyhow = "1.0.83"
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approx = "0.5.1"
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arbitrary = { version = "1.3.2", features = ["derive"] }
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arbtest = "0.3.1"
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flexbuffers = "2.0.0"
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float-cmp = "0.9.0"
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ndarray = { version = "0.15.6", features = ["rayon", "serde"] }
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float-cmp = "0.10.0"
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ndarray = { version = "0.16.1", features = ["rayon", "serde"] }
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serde = "1.0.200"
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tar = "0.4.40"
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tempfile = "3.10.1"
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xz = "0.1.0"
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[tool.maturin]
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profile = "release"
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all-features = true
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manifest-path = "Cargo.toml"
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236
poetry.lock
generated
236
poetry.lock
generated
@@ -1,73 +1,79 @@
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# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand.
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# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand.
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[[package]]
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version = "1.7.4"
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description = "Build and publish crates with pyo3, cffi and uniffi bindings as well as rust binaries as python packages"
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[package.dependencies]
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reports = ["lxml"]
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@@ -85,87 +91,105 @@ files = [
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[[package]]
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{file = "numpy-2.1.2-cp313-cp313-win_amd64.whl", hash = "sha256:f2ded8d9b6f68cc26f8425eda5d3877b47343e68ca23d0d0846f4d312ecaa445"},
|
||||
{file = "numpy-2.1.2-cp313-cp313t-macosx_10_13_x86_64.whl", hash = "sha256:2ffef621c14ebb0188a8633348504a35c13680d6da93ab5cb86f4e54b7e922b5"},
|
||||
{file = "numpy-2.1.2-cp313-cp313t-macosx_11_0_arm64.whl", hash = "sha256:ad369ed238b1959dfbade9018a740fb9392c5ac4f9b5173f420bd4f37ba1f7a0"},
|
||||
{file = "numpy-2.1.2-cp313-cp313t-macosx_14_0_arm64.whl", hash = "sha256:d82075752f40c0ddf57e6e02673a17f6cb0f8eb3f587f63ca1eaab5594da5b17"},
|
||||
{file = "numpy-2.1.2-cp313-cp313t-macosx_14_0_x86_64.whl", hash = "sha256:1600068c262af1ca9580a527d43dc9d959b0b1d8e56f8a05d830eea39b7c8af6"},
|
||||
{file = "numpy-2.1.2-cp313-cp313t-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:a26ae94658d3ba3781d5e103ac07a876b3e9b29db53f68ed7df432fd033358a8"},
|
||||
{file = "numpy-2.1.2-cp313-cp313t-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:13311c2db4c5f7609b462bc0f43d3c465424d25c626d95040f073e30f7570e35"},
|
||||
{file = "numpy-2.1.2-cp313-cp313t-musllinux_1_1_x86_64.whl", hash = "sha256:2abbf905a0b568706391ec6fa15161fad0fb5d8b68d73c461b3c1bab6064dd62"},
|
||||
{file = "numpy-2.1.2-cp313-cp313t-musllinux_1_2_aarch64.whl", hash = "sha256:ef444c57d664d35cac4e18c298c47d7b504c66b17c2ea91312e979fcfbdfb08a"},
|
||||
{file = "numpy-2.1.2-pp310-pypy310_pp73-macosx_10_15_x86_64.whl", hash = "sha256:bdd407c40483463898b84490770199d5714dcc9dd9b792f6c6caccc523c00952"},
|
||||
{file = "numpy-2.1.2-pp310-pypy310_pp73-macosx_14_0_x86_64.whl", hash = "sha256:da65fb46d4cbb75cb417cddf6ba5e7582eb7bb0b47db4b99c9fe5787ce5d91f5"},
|
||||
{file = "numpy-2.1.2-pp310-pypy310_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:1c193d0b0238638e6fc5f10f1b074a6993cb13b0b431f64079a509d63d3aa8b7"},
|
||||
{file = "numpy-2.1.2-pp310-pypy310_pp73-win_amd64.whl", hash = "sha256:a7d80b2e904faa63068ead63107189164ca443b42dd1930299e0d1cb041cec2e"},
|
||||
{file = "numpy-2.1.2.tar.gz", hash = "sha256:13532a088217fa624c99b843eeb54640de23b3414b14aa66d023805eb731066c"},
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "ruff"
|
||||
version = "0.4.2"
|
||||
version = "0.7.1"
|
||||
description = "An extremely fast Python linter and code formatter, written in Rust."
|
||||
optional = false
|
||||
python-versions = ">=3.7"
|
||||
files = [
|
||||
{file = "ruff-0.4.2-py3-none-macosx_10_12_x86_64.macosx_11_0_arm64.macosx_10_12_universal2.whl", hash = "sha256:8d14dc8953f8af7e003a485ef560bbefa5f8cc1ad994eebb5b12136049bbccc5"},
|
||||
{file = "ruff-0.4.2-py3-none-macosx_10_12_x86_64.whl", hash = "sha256:24016ed18db3dc9786af103ff49c03bdf408ea253f3cb9e3638f39ac9cf2d483"},
|
||||
{file = "ruff-0.4.2-py3-none-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:0e2e06459042ac841ed510196c350ba35a9b24a643e23db60d79b2db92af0c2b"},
|
||||
{file = "ruff-0.4.2-py3-none-manylinux_2_17_armv7l.manylinux2014_armv7l.whl", hash = "sha256:3afabaf7ba8e9c485a14ad8f4122feff6b2b93cc53cd4dad2fd24ae35112d5c5"},
|
||||
{file = "ruff-0.4.2-py3-none-manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:799eb468ea6bc54b95527143a4ceaf970d5aa3613050c6cff54c85fda3fde480"},
|
||||
{file = "ruff-0.4.2-py3-none-manylinux_2_17_ppc64.manylinux2014_ppc64.whl", hash = "sha256:ec4ba9436a51527fb6931a8839af4c36a5481f8c19e8f5e42c2f7ad3a49f5069"},
|
||||
{file = "ruff-0.4.2-py3-none-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:6a2243f8f434e487c2a010c7252150b1fdf019035130f41b77626f5655c9ca22"},
|
||||
{file = "ruff-0.4.2-py3-none-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:8772130a063f3eebdf7095da00c0b9898bd1774c43b336272c3e98667d4fb8fa"},
|
||||
{file = "ruff-0.4.2-py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:6ab165ef5d72392b4ebb85a8b0fbd321f69832a632e07a74794c0e598e7a8376"},
|
||||
{file = "ruff-0.4.2-py3-none-musllinux_1_2_aarch64.whl", hash = "sha256:1f32cadf44c2020e75e0c56c3408ed1d32c024766bd41aedef92aa3ca28eef68"},
|
||||
{file = "ruff-0.4.2-py3-none-musllinux_1_2_armv7l.whl", hash = "sha256:22e306bf15e09af45ca812bc42fa59b628646fa7c26072555f278994890bc7ac"},
|
||||
{file = "ruff-0.4.2-py3-none-musllinux_1_2_i686.whl", hash = "sha256:82986bb77ad83a1719c90b9528a9dd663c9206f7c0ab69282af8223566a0c34e"},
|
||||
{file = "ruff-0.4.2-py3-none-musllinux_1_2_x86_64.whl", hash = "sha256:652e4ba553e421a6dc2a6d4868bc3b3881311702633eb3672f9f244ded8908cd"},
|
||||
{file = "ruff-0.4.2-py3-none-win32.whl", hash = "sha256:7891ee376770ac094da3ad40c116258a381b86c7352552788377c6eb16d784fe"},
|
||||
{file = "ruff-0.4.2-py3-none-win_amd64.whl", hash = "sha256:5ec481661fb2fd88a5d6cf1f83403d388ec90f9daaa36e40e2c003de66751798"},
|
||||
{file = "ruff-0.4.2-py3-none-win_arm64.whl", hash = "sha256:cbd1e87c71bca14792948c4ccb51ee61c3296e164019d2d484f3eaa2d360dfaf"},
|
||||
{file = "ruff-0.4.2.tar.gz", hash = "sha256:33bcc160aee2520664bc0859cfeaebc84bb7323becff3f303b8f1f2d81cb4edc"},
|
||||
{file = "ruff-0.7.1-py3-none-linux_armv6l.whl", hash = "sha256:cb1bc5ed9403daa7da05475d615739cc0212e861b7306f314379d958592aaa89"},
|
||||
{file = "ruff-0.7.1-py3-none-macosx_10_12_x86_64.whl", hash = "sha256:27c1c52a8d199a257ff1e5582d078eab7145129aa02721815ca8fa4f9612dc35"},
|
||||
{file = "ruff-0.7.1-py3-none-macosx_11_0_arm64.whl", hash = "sha256:588a34e1ef2ea55b4ddfec26bbe76bc866e92523d8c6cdec5e8aceefeff02d99"},
|
||||
{file = "ruff-0.7.1-py3-none-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:94fc32f9cdf72dc75c451e5f072758b118ab8100727168a3df58502b43a599ca"},
|
||||
{file = "ruff-0.7.1-py3-none-manylinux_2_17_armv7l.manylinux2014_armv7l.whl", hash = "sha256:985818742b833bffa543a84d1cc11b5e6871de1b4e0ac3060a59a2bae3969250"},
|
||||
{file = "ruff-0.7.1-py3-none-manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:32f1e8a192e261366c702c5fb2ece9f68d26625f198a25c408861c16dc2dea9c"},
|
||||
{file = "ruff-0.7.1-py3-none-manylinux_2_17_ppc64.manylinux2014_ppc64.whl", hash = "sha256:699085bf05819588551b11751eff33e9ca58b1b86a6843e1b082a7de40da1565"},
|
||||
{file = "ruff-0.7.1-py3-none-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:344cc2b0814047dc8c3a8ff2cd1f3d808bb23c6658db830d25147339d9bf9ea7"},
|
||||
{file = "ruff-0.7.1-py3-none-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:4316bbf69d5a859cc937890c7ac7a6551252b6a01b1d2c97e8fc96e45a7c8b4a"},
|
||||
{file = "ruff-0.7.1-py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:79d3af9dca4c56043e738a4d6dd1e9444b6d6c10598ac52d146e331eb155a8ad"},
|
||||
{file = "ruff-0.7.1-py3-none-musllinux_1_2_aarch64.whl", hash = "sha256:c5c121b46abde94a505175524e51891f829414e093cd8326d6e741ecfc0a9112"},
|
||||
{file = "ruff-0.7.1-py3-none-musllinux_1_2_armv7l.whl", hash = "sha256:8422104078324ea250886954e48f1373a8fe7de59283d747c3a7eca050b4e378"},
|
||||
{file = "ruff-0.7.1-py3-none-musllinux_1_2_i686.whl", hash = "sha256:56aad830af8a9db644e80098fe4984a948e2b6fc2e73891538f43bbe478461b8"},
|
||||
{file = "ruff-0.7.1-py3-none-musllinux_1_2_x86_64.whl", hash = "sha256:658304f02f68d3a83c998ad8bf91f9b4f53e93e5412b8f2388359d55869727fd"},
|
||||
{file = "ruff-0.7.1-py3-none-win32.whl", hash = "sha256:b517a2011333eb7ce2d402652ecaa0ac1a30c114fbbd55c6b8ee466a7f600ee9"},
|
||||
{file = "ruff-0.7.1-py3-none-win_amd64.whl", hash = "sha256:f38c41fcde1728736b4eb2b18850f6d1e3eedd9678c914dede554a70d5241307"},
|
||||
{file = "ruff-0.7.1-py3-none-win_arm64.whl", hash = "sha256:19aa200ec824c0f36d0c9114c8ec0087082021732979a359d6f3c390a6ff2a37"},
|
||||
{file = "ruff-0.7.1.tar.gz", hash = "sha256:9d8a41d4aa2dad1575adb98a82870cf5db5f76b2938cf2206c22c940034a36f4"},
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "typing-extensions"
|
||||
version = "4.11.0"
|
||||
version = "4.12.2"
|
||||
description = "Backported and Experimental Type Hints for Python 3.8+"
|
||||
optional = false
|
||||
python-versions = ">=3.8"
|
||||
files = [
|
||||
{file = "typing_extensions-4.11.0-py3-none-any.whl", hash = "sha256:c1f94d72897edaf4ce775bb7558d5b79d8126906a14ea5ed1635921406c0387a"},
|
||||
{file = "typing_extensions-4.11.0.tar.gz", hash = "sha256:83f085bd5ca59c80295fc2a82ab5dac679cbe02b9f33f7d83af68e241bea51b0"},
|
||||
{file = "typing_extensions-4.12.2-py3-none-any.whl", hash = "sha256:04e5ca0351e0f3f85c6853954072df659d0d13fac324d0072316b67d7794700d"},
|
||||
{file = "typing_extensions-4.12.2.tar.gz", hash = "sha256:1a7ead55c7e559dd4dee8856e3a88b41225abfe1ce8df57b7c13915fe121ffb8"},
|
||||
]
|
||||
|
||||
[metadata]
|
||||
lock-version = "2.0"
|
||||
python-versions = "^3.11"
|
||||
content-hash = "d42c1045a4073be06cbdd6380b01cb3da87f4a970e2f7dd5128652d96f79481c"
|
||||
content-hash = "85b3c4320e42e10d502b97a6dddd344bf2e05d44ff2cffc196b7367b249157e5"
|
||||
|
||||
@@ -1,3 +1,13 @@
|
||||
[project]
|
||||
name = "read-aconity-layers"
|
||||
requires-python = ">=3.11"
|
||||
classifiers = [
|
||||
"Programming Language :: Rust",
|
||||
"Programming Language :: Python :: Implementation :: CPython",
|
||||
"Programming Language :: Python :: Implementation :: PyPy",
|
||||
]
|
||||
dynamic = ["version"]
|
||||
|
||||
[tool.poetry]
|
||||
name = "read-aconity-layers"
|
||||
version = "0.2.0"
|
||||
@@ -9,29 +19,19 @@ readme = "README.md"
|
||||
|
||||
[tool.poetry.dependencies]
|
||||
python = "^3.11"
|
||||
maturin = "^1.5.1"
|
||||
numpy = "^1.26.4"
|
||||
maturin = "^1.7.4"
|
||||
numpy = "^2.1.2"
|
||||
|
||||
[tool.poetry.group.dev.dependencies]
|
||||
ruff = "^0.4.2"
|
||||
mypy = "^1.10.0"
|
||||
ruff = "^0.7.1"
|
||||
mypy = "^1.13.0"
|
||||
|
||||
[build-system]
|
||||
requires = ["maturin>=1.0,<2.0"]
|
||||
requires = ["maturin>=1.7,<2.0"]
|
||||
build-backend = "maturin"
|
||||
|
||||
[tool.maturin]
|
||||
# Bindings type
|
||||
bindings = "pyo3"
|
||||
# Don't check for manylinux compliance
|
||||
skip-auditwheel = false
|
||||
# Python source directory
|
||||
# python-source = "src/mtpy"
|
||||
# Strip the library for minimum file size
|
||||
strip = true
|
||||
# Source distribution generator,
|
||||
# supports cargo (default) and git.
|
||||
sdist-generator = "cargo"
|
||||
features = ["pyo3/extension-module"]
|
||||
|
||||
[tool.ruff]
|
||||
# Same as Black.
|
||||
|
||||
64
src/lib.rs
64
src/lib.rs
@@ -1,7 +1,7 @@
|
||||
use numpy::{IntoPyArray, PyArray2};
|
||||
use ndarray::{ArrayBase, Ix2, OwnedRepr};
|
||||
use numpy::{PyArray2, ToPyArray};
|
||||
use pyo3::exceptions;
|
||||
use pyo3::prelude::{pymodule, PyErr, PyModule, PyResult, Python};
|
||||
use pyo3::types::{PyList, PyString};
|
||||
use pyo3::prelude::*;
|
||||
use std::path::Path;
|
||||
|
||||
pub mod rust_fn;
|
||||
@@ -16,9 +16,7 @@ impl From<rust_fn::ReadError> for PyErr {
|
||||
PyErr::new::<exceptions::PyRuntimeError, _>(format!("{}", e))
|
||||
}
|
||||
rust_fn::ReadError::Io(e) => PyErr::new::<exceptions::PyIOError, _>(format!("{}", e)),
|
||||
rust_fn::ReadError::NdarrayCSV(e) => {
|
||||
PyErr::new::<exceptions::PyIOError, _>(format!("{}", e))
|
||||
}
|
||||
rust_fn::ReadError::CSV(e) => PyErr::new::<exceptions::PyIOError, _>(format!("{}", e)),
|
||||
rust_fn::ReadError::ParseFloatError(e) => {
|
||||
PyErr::new::<exceptions::PyRuntimeError, _>(format!("{}", e))
|
||||
}
|
||||
@@ -27,31 +25,41 @@ impl From<rust_fn::ReadError> for PyErr {
|
||||
}
|
||||
}
|
||||
|
||||
#[pymodule]
|
||||
fn read_aconity_layers(_py: Python<'_>, m: &PyModule) -> PyResult<()> {
|
||||
#[pyfn(m)]
|
||||
fn read_layers<'py>(py: Python<'py>, folder: &PyString) -> PyResult<&'py PyArray2<f64>> {
|
||||
Ok(rust_fn::read_layers(folder.to_str().unwrap())?.into_pyarray(py))
|
||||
}
|
||||
#[pyfunction]
|
||||
fn read_layers<'py>(_py: Python<'py>, folder: &'py str) -> PyResult<Bound<'py, PyArray2<f64>>>
|
||||
where
|
||||
ArrayBase<OwnedRepr<f64>, Ix2>: ToPyArray<Item = f64, Dim = Ix2>,
|
||||
{
|
||||
let rs_result = rust_fn::read_layers(folder)?;
|
||||
let py_result = rs_result.to_pyarray_bound(_py);
|
||||
Ok(py_result)
|
||||
}
|
||||
|
||||
#[pyfn(m)]
|
||||
fn read_selected_layers<'py>(
|
||||
py: Python<'py>,
|
||||
file_list: &PyList,
|
||||
) -> PyResult<&'py PyArray2<f64>> {
|
||||
Ok(rust_fn::read_selected_layers(
|
||||
file_list
|
||||
#[pyfunction]
|
||||
fn read_selected_layers<'py>(
|
||||
_py: Python<'py>,
|
||||
file_list: Vec<String>,
|
||||
) -> PyResult<Bound<'py, PyArray2<f64>>> {
|
||||
let path_list = file_list
|
||||
.iter()
|
||||
.map(|x| Path::new(&(*x).str().unwrap().to_string()).to_path_buf())
|
||||
.collect(),
|
||||
)?
|
||||
.into_pyarray(py))
|
||||
}
|
||||
.map(|x| Path::new(x).to_path_buf())
|
||||
.collect();
|
||||
let rs_result = rust_fn::read_selected_layers(path_list)?;
|
||||
let py_result = rs_result.to_pyarray_bound(_py);
|
||||
Ok(py_result)
|
||||
}
|
||||
|
||||
#[pyfn(m)]
|
||||
fn read_layer<'py>(py: Python<'py>, file: &PyString) -> PyResult<&'py PyArray2<f64>> {
|
||||
Ok(rust_fn::read_layer(file.to_str().unwrap())?.into_pyarray(py))
|
||||
}
|
||||
#[pyfunction]
|
||||
fn read_layer<'py>(_py: Python<'py>, file: String) -> PyResult<Bound<'py, PyArray2<f64>>> {
|
||||
let rs_result = rust_fn::read_layer(&file)?;
|
||||
let py_result = rs_result.to_pyarray_bound(_py);
|
||||
Ok(py_result)
|
||||
}
|
||||
|
||||
#[pymodule]
|
||||
fn read_aconity_layers(_py: Python, m: &Bound<'_, PyModule>) -> PyResult<()> {
|
||||
m.add_function(wrap_pyfunction!(read_layers, m)?)?;
|
||||
m.add_function(wrap_pyfunction!(read_selected_layers, m)?)?;
|
||||
m.add_function(wrap_pyfunction!(read_layer, m)?)?;
|
||||
Ok(())
|
||||
}
|
||||
|
||||
@@ -2,7 +2,6 @@ use csv::ReaderBuilder;
|
||||
use glob::glob;
|
||||
use indicatif::ProgressBar;
|
||||
use ndarray::{concatenate, Array2, ArrayView2, Axis, Slice};
|
||||
use ndarray_csv::Array2Reader;
|
||||
use rayon::prelude::*;
|
||||
use std::fs::File;
|
||||
use std::path::{Path, PathBuf};
|
||||
@@ -19,8 +18,8 @@ pub enum ReadError {
|
||||
#[error("IO error: {0}")]
|
||||
Io(#[from] std::io::Error),
|
||||
|
||||
#[error("NdarrayCSV error: {0}")]
|
||||
NdarrayCSV(#[from] ndarray_csv::ReadError),
|
||||
#[error("CSV error: {0}")]
|
||||
CSV(#[from] csv::Error),
|
||||
|
||||
#[error("Float parse error: {0}")]
|
||||
ParseFloatError(#[from] std::num::ParseFloatError),
|
||||
@@ -158,14 +157,28 @@ pub fn read_layer(file: &str) -> Result<Array2<f64>> {
|
||||
pub fn read_file(filepath: PathBuf) -> Result<(Array2<f64>, f64, usize)> {
|
||||
let z: f64 = get_z(&filepath)?;
|
||||
let file = File::open(filepath)?;
|
||||
let mut rdr = ReaderBuilder::new()
|
||||
.has_headers(false)
|
||||
.delimiter(b' ')
|
||||
.from_reader(file);
|
||||
let array_read: Array2<f64> = rdr.deserialize_array2_dynamic()?;
|
||||
let z_len: usize = array_read.shape()[0];
|
||||
let mut rdr = ReaderBuilder::new().has_headers(false).from_reader(file);
|
||||
let data = rdr
|
||||
.records()
|
||||
.into_iter()
|
||||
.collect::<std::result::Result<Vec<csv::StringRecord>, _>>()?
|
||||
.iter()
|
||||
.map(|x| {
|
||||
x.iter()
|
||||
.map(|y| y.parse::<f64>().map_err(|e| ReadError::ParseFloatError(e)))
|
||||
.collect::<Result<Vec<f64>>>()
|
||||
})
|
||||
.collect::<Result<Vec<_>>>()?;
|
||||
let length = data.len();
|
||||
let width = data[0].len(); // WARNING: assumes fixed width columns!
|
||||
let mut arr: Array2<f64> = Array2::zeros((length, width));
|
||||
for (data_row, mut arr_row) in data.iter().zip(arr.axis_iter_mut(Axis(0))) {
|
||||
for (data_i, arr_i) in data_row.iter().zip(arr_row.iter_mut()) {
|
||||
*arr_i = *data_i
|
||||
}
|
||||
}
|
||||
|
||||
Ok((array_read, z, z_len))
|
||||
Ok((arr, z, length))
|
||||
}
|
||||
|
||||
pub fn get_z(filepath: &Path) -> Result<f64> {
|
||||
@@ -220,13 +233,16 @@ mod tests {
|
||||
}
|
||||
impl<'a> Arbitrary<'a> for ExampleData {
|
||||
fn arbitrary(u: &mut Unstructured<'a>) -> ArbResult<Self> {
|
||||
// NOTE: We need to add 1 here, it len == 0 the test will fail
|
||||
// NOTE: We need to add 1 here, if len == 0 the test will fail
|
||||
let len = 1 + u
|
||||
.arbitrary_len::<(isize, isize, isize, isize)>()?
|
||||
.min(usize::MAX - 1);
|
||||
let ar =
|
||||
Array2::from_shape_simple_fn((4, len), || isize::arbitrary(u).unwrap_or_default());
|
||||
let z = f64::arbitrary(u)?.abs() / Z_SCALING;
|
||||
// This is a clunky way to account for truncation of floats when writing filepath
|
||||
let z = format!("{:.32}", f64::arbitrary(u)?.abs() / Z_SCALING)
|
||||
.parse()
|
||||
.map_err(|_| arbitrary::Error::IncorrectFormat)?;
|
||||
|
||||
Ok(ExampleData { z, ar })
|
||||
}
|
||||
@@ -291,8 +307,10 @@ mod tests {
|
||||
fn proptest_read_file() {
|
||||
fn prop(u: &mut Unstructured<'_>) -> ArbResult<()> {
|
||||
let data = ExampleData::arbitrary(u)?;
|
||||
let (_tmpdir, tmpfpath) = create_test_pcd(data.z, &data.ar).unwrap();
|
||||
let (ar_out, z_out, _) = rust_fn::read_file(tmpfpath).unwrap();
|
||||
let (_tmpdir, tmpfpath) = create_test_pcd(data.z, &data.ar)
|
||||
.map_err(|_e| arbitrary::Error::IncorrectFormat)?;
|
||||
let (ar_out, z_out, _) =
|
||||
rust_fn::read_file(tmpfpath).map_err(|_e| arbitrary::Error::IncorrectFormat)?;
|
||||
let actual_result = ReadResult {
|
||||
z: z_out,
|
||||
ar: ar_out,
|
||||
|
||||
Reference in New Issue
Block a user