Version bump

Added workflow to update lockfiles in dependabot pull requests
pip-deps(deps): bump the python-minor-patch group with 3 updates (#92 )
2026-08-16 10:32:52 +01:00 · 2026-08-11 11:08:54 +01:00 · 2026-08-11 11:07:31 +01:00 · 2026-08-11 09:56:05 +01:00 · 2026-08-11 09:55:45 +01:00 · 2026-08-04 10:54:20 +01:00
12 changed files with 1009 additions and 39 deletions
@@ -3,9 +3,17 @@ updates:
  - package-ecosystem: "cargo"
    directory: "/"
    groups:
-      rust-dependencies:
+      rust-major:
        patterns:
          - "*"
+        update-types:
+          - "major"
+      rust-minor-patch:
+        patterns:
+          - "*"
+        update-types:
+          - "minor"
+          - "patch"
    schedule:
      interval: "weekly"
      day: "monday"
@@ -22,9 +30,17 @@ updates:
  - package-ecosystem: "pip"
    directory: "/"
    groups:
-      python-dependencies:
+      python-major:
        patterns:
          - "*"
+        update-types:
+          - "major"
+      python-minor-patch:
+        patterns:
+          - "*"
+        update-types:
+          - "minor"
+          - "patch"
    schedule:
      interval: "weekly"
      day: "monday"
@@ -41,9 +57,17 @@ updates:

  - package-ecosystem: "github-actions"
    groups:
-      action-dependencies:
+      action-major:
        patterns:
          - "*"
+        update-types:
+          - "major"
+      action-minor-patch:
+        patterns:
+          - "*"
+        update-types:
+          - "minor"
+          - "patch"
    directory: "/"
    schedule:
      interval: "weekly"
@@ -37,8 +37,8 @@ jobs:
          - runner: ubuntu-22.04
            target: ppc64le
    steps:
-      - uses: actions/checkout@v5
-      - uses: actions/setup-python@v6
+      - uses: actions/checkout@v7
+      - uses: actions/setup-python@v7
        with:
          python-version: 3.x
      - name: Build wheels
@@ -56,7 +56,7 @@ jobs:
          sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
          manylinux: auto
      - name: Upload wheels
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
        with:
          name: wheels-linux-${{ matrix.platform.target }}
          path: dist
@@ -75,8 +75,8 @@ jobs:
          - runner: ubuntu-22.04
            target: armv7
    steps:
-      - uses: actions/checkout@v5
-      - uses: actions/setup-python@v6
+      - uses: actions/checkout@v7
+      - uses: actions/setup-python@v7
        with:
          python-version: 3.x
      - name: Build wheels
@@ -94,7 +94,7 @@ jobs:
          sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
          manylinux: musllinux_1_2
      - name: Upload wheels
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
        with:
          name: wheels-musllinux-${{ matrix.platform.target }}
          path: dist
@@ -109,8 +109,8 @@ jobs:
          - runner: windows-latest
            target: x86
    steps:
-      - uses: actions/checkout@v5
-      - uses: actions/setup-python@v6
+      - uses: actions/checkout@v7
+      - uses: actions/setup-python@v7
        with:
          python-version: 3.x
          architecture: ${{ matrix.platform.target }}
@@ -128,7 +128,7 @@ jobs:
      #     args: --release --out dist -i python3.14t
      #     sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
      - name: Upload wheels
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
        with:
          name: wheels-windows-${{ matrix.platform.target }}
          path: dist
@@ -145,8 +145,8 @@ jobs:
          - runner: macos-15-intel
            target: aarch64
    steps:
-      - uses: actions/checkout@v5
-      - uses: actions/setup-python@v6
+      - uses: actions/checkout@v7
+      - uses: actions/setup-python@v7
        with:
          python-version: 3.x
      - name: Build wheels
@@ -162,7 +162,7 @@ jobs:
          args: --release --out dist -i python3.14t
          sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
      - name: Upload wheels
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
        with:
          name: wheels-macos-${{ matrix.platform.target }}
          path: dist
@@ -170,14 +170,14 @@ jobs:
  sdist:
    runs-on: ubuntu-latest
    steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v7
      - name: Build sdist
        uses: PyO3/maturin-action@v1
        with:
          command: sdist
          args: --out dist
      - name: Upload sdist
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
        with:
          name: wheels-sdist
          path: dist
@@ -195,9 +195,9 @@ jobs:
      # Used to generate artifact attestation
      attestations: write
    steps:
-      - uses: actions/download-artifact@v5
+      - uses: actions/download-artifact@v8
      - name: Generate artifact attestation
-        uses: actions/attest-build-provenance@v3
+        uses: actions/attest-build-provenance@v4
        with:
          subject-path: "wheels-*/*"
      - name: Publish to PyPI
@@ -208,3 +208,9 @@ jobs:
        with:
          command: upload
          args: --non-interactive --skip-existing wheels-*/*
+      - name: Create GitHub Release
+        if: ${{ startsWith(github.ref, 'refs/tags/') }}
+        uses: softprops/action-gh-release@v3
+        with:
+          files: wheels-*/*
+          generate_release_notes: true
@@ -0,0 +1,33 @@
+name: Dependabot uv update
+
+on:
+  pull_request:
+    paths:
+      - pyproject.toml
+
+permissions:
+  contents: write
+
+jobs:
+  update-lock:
+    runs-on: ubuntu-latest
+    if: github.actor == 'dependabot[bot]'
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          ref: ${{ github.event.pull_request.head.ref }}
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@v3
+
+      - name: Update uv.lock and requirements.txt
+        run: |
+          uv lock
+          uv export --output-file=requirements.txt
+
+      - name: Commit and push changes
+        run: |
+          git config --global user.name "dependabot[bot]"
+          git config --global user.email "dependabot[bot]@users.noreply.github.com"
+          git add uv.lock requirements.txt
+          git diff --quiet && git diff --staged --quiet || (git commit -m "Update uv.lock and requirements.txt" && git push)
@@ -19,13 +19,13 @@ jobs:
        os: [ubuntu-latest, windows-latest, macos-latest]

    steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v7
    - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v6
+      uses: actions/setup-python@v7
      with:
        python-version: ${{ matrix.python-version }}
    - name: Set up uv
-      uses: astral-sh/setup-uv@v5
+      uses: astral-sh/setup-uv@v7
      with:
        enable-cache: true
    - name: Install Act dependencies
@@ -20,9 +20,9 @@ jobs:
        os: [ubuntu-latest, windows-latest, macos-latest]

    steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v7
    - name: Set up Python
-      uses: actions/setup-python@v6
+      uses: actions/setup-python@v7
      with:
        python-version: "3.14"
    - name: Install Act dependencies
@@ -14,7 +14,7 @@ jobs:
    runs-on: ubuntu-latest
    steps:
      - name: Checkout Repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v7
        with:
          fetch-depth: 0

@@ -46,7 +46,7 @@ jobs:

      - name: Trigger Release Workflow
        if: env.TAG_EXISTS == 'false'
-        uses: actions/github-script@v8
+        uses: actions/github-script@v9
        with:
          github-token: ${{ secrets.GITHUB_TOKEN }}
          script: |
@@ -5,7 +5,7 @@ target/

 # Remove Cargo.lock from gitignore if creating an executable, leave it for libraries
 # More information here https://doc.rust-lang.org/cargo/guide/cargo-toml-vs-cargo-lock.html
-Cargo.lock
+# Cargo.lock

 # These are backup files generated by rustfmt
 **/*.rs.bk
@@ -0,0 +1,907 @@
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+# It is not intended for manual editing.
+version = 4
+
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+
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+name = "approx"
+version = "0.5.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "cab112f0a86d568ea0e627cc1d6be74a1e9cd55214684db5561995f6dad897c6"
+dependencies = [
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+
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+name = "arbitrary"
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@@ -1,6 +1,6 @@
 [package]
 name = "read_aconity_layers"
-version = "0.5.0"
+version = "0.5.1"
 edition = "2024"

 [lib]
@@ -12,9 +12,9 @@ crate-type = ["cdylib"]
 csv = "1.3.0"
 glob = "0.3.2"
 indicatif = "0.18.0"
-ndarray = { version = "0.16.1", features = ["rayon"] }
-numpy = "0.25.0"
-pyo3 = { version = "0.25.0", features = ["abi3-py311", "extension-module"] }
+ndarray = { version = "0.17.2", features = ["rayon"] }
+numpy = "0.29.0"
+pyo3 = { version = "0.29.0", features = ["abi3-py311", "extension-module"] }
 rayon = "1.10.0"
 thiserror = "2.0.12"

@@ -25,7 +25,7 @@ arbitrary = { version = "1.3.2", features = ["derive"] }
 arbtest = "0.3.1"
 flexbuffers = "25.2.10"
 float-cmp = "0.10.0"
-ndarray = { version = "0.16.1", features = ["rayon", "serde"] }
+ndarray = { version = "0.17.2", features = ["rayon", "serde"] }
 serde = "1.0.200"
 tar = "0.4.40"
 tempfile = "3.10.1"
@@ -21,7 +21,7 @@ documentation = "https://read-aconity-layers.readthedocs.io/"

 [dependency-groups]
 dev = [
-    "ruff>=0.11.11,<0.16.0",
+    "ruff>=0.11.11,<0.17.0",
    "ty>=0.0.51",
    "pytest>=8.3.5,<10.0.0",
    "loguru>=0.7.3",
@@ -32,10 +32,10 @@ docs = [
    "sphinx>=8.2.3",
    "sphinx-autodoc-typehints>=3.2.0",
    "sphinx-copybutton>=0.5.2",
-    "sphinxcontrib-rust>=0.8.1,<1.2.0",
+    "sphinxcontrib-rust>=0.8.1,<1.3.0",
    "myst-parser>=4.0.1",
    "sphinx-autobuild>=2024.10.3,<2026.0.0",
-    "pydata-sphinx-theme>=0.16.1,<0.20.0",
+    "pydata-sphinx-theme>=0.16.1,<0.21.0",
 ]

 [build-system]
@@ -1,5 +1,5 @@
 # This file was autogenerated by uv via the following command:
-#    uv export --frozen --output-file=requirements.txt
+#    uv export
 -e .
 colorama==0.4.6 ; sys_platform == 'win32' \
    --hash=sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44 \
@@ -744,17 +744,17 @@ dev = [
    { name = "maturin", specifier = ">=1.8.6" },
    { name = "pytest", specifier = ">=8.3.5,<10.0.0" },
    { name = "pytest-cov", specifier = ">=6.1.1,<8.0.0" },
-    { name = "ruff", specifier = ">=0.11.11,<0.16.0" },
+    { name = "ruff", specifier = ">=0.11.11,<0.17.0" },
    { name = "ty", specifier = ">=0.0.51" },
 ]
 docs = [
    { name = "myst-parser", specifier = ">=4.0.1" },
-    { name = "pydata-sphinx-theme", specifier = ">=0.16.1,<0.20.0" },
+    { name = "pydata-sphinx-theme", specifier = ">=0.16.1,<0.21.0" },
    { name = "sphinx", specifier = ">=8.2.3" },
    { name = "sphinx-autobuild", specifier = ">=2024.10.3,<2026.0.0" },
    { name = "sphinx-autodoc-typehints", specifier = ">=3.2.0" },
    { name = "sphinx-copybutton", specifier = ">=0.5.2" },
-    { name = "sphinxcontrib-rust", specifier = ">=0.8.1,<1.2.0" },
+    { name = "sphinxcontrib-rust", specifier = ">=0.8.1,<1.3.0" },
 ]

 [[package]]